View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13298_low_1 (Length: 839)
Name: NF13298_low_1
Description: NF13298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13298_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 730; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 1 - 822
Target Start/End: Original strand, 14868732 - 14869553
Alignment:
| Q |
1 |
tcattcatgttctgtaaccaaaattcattcattcatgcatgctctcttttgtctttgattatgcactgactagaannnnnnnnnnnnnnnnngggtaagn |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14868732 |
tcattcatgttctgtaaccaaaattcattcgttcatgcatgctctcttttgtctttgattatgcactgactagaacatcatcatcatcatcagggtaaga |
14868831 |
T |
|
| Q |
101 |
nnnnnncacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14868832 |
aaaaaacacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgc |
14868931 |
T |
|
| Q |
201 |
taaaagctgtttttcttccttttatatcaaaaagtcacctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14868932 |
taaaagctgtttttcttccttttatatcaaaaagtcacctcatttttgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataat |
14869031 |
T |
|
| Q |
301 |
caccacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869032 |
caccacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagta |
14869131 |
T |
|
| Q |
401 |
cctggtttggcacaaggaatggaaagcttcaacgccgacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattca |
500 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869132 |
cctggtttggcacgaggaatggaaagcttcaacgccgacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattca |
14869231 |
T |
|
| Q |
501 |
aacaacaattccgtgacatgaaacctgatttcatagtcactgacatgttctatccttggagtgttgatattgctgatgaattgggaattccaaggttaat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
14869232 |
aacaacaattccgtgacatgaaacctgatttcatagtcactgacatgttctatccttggagtgttgatgttgctgatgaattgggaattccaaggttaat |
14869331 |
T |
|
| Q |
601 |
ttgcattagtggaagttactttgctcattctgcaatgaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttctt |
700 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14869332 |
ttgtattagtggaagttactttgctcattctgcaatgaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttctt |
14869431 |
T |
|
| Q |
701 |
cctgggttgcctcacaaggtggaaatgaaacgtttacaacttccggattggcttagagcaccgaatgattacacttatttgatgaaaatgattaaagatt |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869432 |
cctgggttgcctcacaaggtggaaatgaaacgtttacaacttccggattggcttagagcaccgaatgattacacttatttgatgaaaatgattaaagatt |
14869531 |
T |
|
| Q |
801 |
cagagagaaaaagctatggatc |
822 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
14869532 |
cagagagaaaaagctatggatc |
14869553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 139 - 822
Target Start/End: Complemental strand, 16909800 - 16909115
Alignment:
| Q |
139 |
ttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaa--gtc |
236 |
Q |
| |
|
||||||||||| | | |||| ||||||||| |||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |
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| T |
16909800 |
ttaaaacaaaatctaatttctaatggaatcctttggtgtgaaagttgaagaagaaacaatgttaaaagctgtttttcttccctttatatcaaaaaaagtc |
16909701 |
T |
|
| Q |
237 |
acctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgcagccatttttcaaacctc |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16909700 |
acctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgttaccataatcaccacaccagcaaatgcagccatttttcaaacctc |
16909601 |
T |
|
| Q |
337 |
aatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacaaggaatggaaagcttcaacgcc |
436 |
Q |
| |
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||||||| |||||| || |||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||| || |
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| T |
16909600 |
catcgaccacgattcaagtcgcggtcggtccattagaactcacattgtcaagtttccacaagtacctggtttgccacaaggaatggaaagtttcaatgct |
16909501 |
T |
|
| Q |
437 |
gacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattcaaacaacaattccgtgacatgaaacctgatttcatag |
536 |
Q |
| |
|
||||||||||| || ||| ||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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|
| T |
16909500 |
gacactcctaaagacataatttccaaaatctatcagggacttgccattctccaagagcaattcacacaactatttcgtgacatgaaacctgatttcatag |
16909401 |
T |
|
| Q |
537 |
tcactgacatgttctatccttggagtgttgatattgctgatgaattgggaattccaaggttaatttgcattagtggaagttactttgctcattctgcaat |
636 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |
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| T |
16909400 |
tcactgacatgttttatccttggagtgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtggaagttactttgctcattctgcaat |
16909301 |
T |
|
| Q |
637 |
gaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagttttcttcttcctgggttgcctcacaaggtggaaatgaaacgttta |
736 |
Q |
| |
|
||||||||||||||| || |||||| || |||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| ||||| |
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|
| T |
16909300 |
gaactctattgaacaatttgaacctcatgccaaagttaaatcgaatagcgtaagttttctgcttcctgggttgcctcacaacgtggaaatgacgcgtttg |
16909201 |
T |
|
| Q |
737 |
caacttccggattggcttagagcaccgaatgattacacttatttgatgaaaatgattaaagattcagagagaaaaagctatggatc |
822 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||| |
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|
| T |
16909200 |
caacttccggattggcttagagcaccaaatggttatacttatttgatgaagatgatcaaagattcagagaaaaaaagctatggatc |
16909115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 12611241 - 12611293
Alignment:
| Q |
254 |
gacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccac |
306 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||| | |||||||||||||| |
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|
| T |
12611241 |
gacatggcaagactatttgctatgcatggtgtggatatcaccataatcaccac |
12611293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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