View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13298_low_10 (Length: 281)
Name: NF13298_low_10
Description: NF13298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13298_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 5655467 - 5655736
Alignment:
| Q |
19 |
cctacccattgtgctttctcagactcaaatacaagtttcattcctgtaaccaaattttacaattagatatcataaagaaacagaaattgaaacaagattt |
118 |
Q |
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| T |
5655467 |
cctacccattgtgctttctcagactcaaatacaagtttcattcctgtaaccaaattttacaattagatatcataaagaaacagaaattgaaacaagattt |
5655566 |
T |
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| Q |
119 |
gtaaaagtattaaaact---------------ttgtgcagcattttattagtgttacctattgactaacatattttgacctatagaaatgtaatgttttc |
203 |
Q |
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| T |
5655567 |
gtaaaagtattaaaactatagtacttgtgaatttgtgcagcattttattagtgttacctattgactaacatattttgacctatagaaatgtaatgttttc |
5655666 |
T |
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| Q |
204 |
aaatggtaaataaatgcaatttataattaccatcaagaaacacagaaccatttgagttgaaccctatgct |
273 |
Q |
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| T |
5655667 |
aaatggtaaataaatgcaatttataattaccatcaagaaacacagaaccatttgagttgaaccctatgct |
5655736 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 47049012 - 47048974
Alignment:
| Q |
34 |
ttctcagactcaaatacaagtttcattcctgtaaccaaa |
72 |
Q |
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| T |
47049012 |
ttctcagattcgaatacaagtttcattcctgtaaccaaa |
47048974 |
T |
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