View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13298_low_11 (Length: 274)
Name: NF13298_low_11
Description: NF13298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13298_low_11 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 2018868 - 2019125
Alignment:
| Q |
17 |
ataaacaggaatccaagtgtcaannnnnnnggttctgctggcgagggaatgaaaaattatctttacactgattatctgaacatctctgtcagttgcatta |
116 |
Q |
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| T |
2018868 |
ataaacaggaatccaagtgtcaatttttttggttctgctggcgggggaatgaaaaattatctttacactgattatctgaacatctctgtcagttgcatta |
2018967 |
T |
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| Q |
117 |
tctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagata |
216 |
Q |
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| T |
2018968 |
tctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagata |
2019067 |
T |
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| Q |
217 |
tctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattac |
274 |
Q |
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| T |
2019068 |
tctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattac |
2019125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 97 - 274
Target Start/End: Original strand, 2035769 - 2035945
Alignment:
| Q |
97 |
catctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggat |
196 |
Q |
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| T |
2035769 |
catctctgtcacttgcactatct-aatttgaaataattgcttttcctttgtagaatggacacattaagaaaacatcttcccgtttctggttctgagggat |
2035867 |
T |
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| Q |
197 |
tacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattac |
274 |
Q |
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| T |
2035868 |
tgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggtacattcattac |
2035945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 91 - 274
Target Start/End: Original strand, 2021574 - 2021757
Alignment:
| Q |
91 |
tctgaacatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccg |
190 |
Q |
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|||| |||| ||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| || | ||||||||||| ||| | |
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| T |
2021574 |
tctgtacatttctgtcacttgcattatctaaatttgaaataattgatttttctctgtagaatggacacgttaagaaaacgtcttcctgtttctagttatg |
2021673 |
T |
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| Q |
191 |
agggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattac |
274 |
Q |
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| T |
2021674 |
agggattaattgaacttcagaagattgctcaaaggtttgaagataagatttacacttctgcgacaagcaaggtacattcattac |
2021757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 91 - 274
Target Start/End: Original strand, 1990012 - 1990195
Alignment:
| Q |
91 |
tctgaacatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccg |
190 |
Q |
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| T |
1990012 |
tctgaacatctctgtcacttgcactatctaaatttgaagtaattgcttttcctttgtagaatggacacgttaagaaaatatcatcctatttctggttctg |
1990111 |
T |
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| Q |
191 |
agggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattac |
274 |
Q |
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| T |
1990112 |
agggattacttgaacttcggaagcttgctcaaaggtttgaagataagatctatactgatgcggcaagccaggtacattcattac |
1990195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 40911156 - 40911269
Alignment:
| Q |
151 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
250 |
Q |
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| T |
40911156 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaagtttgaagataagatttatactgctg |
40911255 |
T |
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| Q |
251 |
cgacaagccaggta |
264 |
Q |
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| T |
40911256 |
caacaagccaggta |
40911269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 44968831 - 44968718
Alignment:
| Q |
151 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
250 |
Q |
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|||||||| |||| ||| ||| |||||||||||||| || ||||| | |||||||| | |||| | ||| |||||||||| |||||||||||| | | |
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| T |
44968831 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaggtttgaagagaagatttatactgctg |
44968732 |
T |
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| Q |
251 |
cgacaagccaggta |
264 |
Q |
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| T |
44968731 |
caacaagccaggta |
44968718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 44983146 - 44983033
Alignment:
| Q |
151 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
250 |
Q |
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| T |
44983146 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaactttggaagattgcccaaaggtttgaagagaagatttatactgctg |
44983047 |
T |
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| Q |
251 |
cgacaagccaggta |
264 |
Q |
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| T |
44983046 |
caacaagccaggta |
44983033 |
T |
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