View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13298_low_2 (Length: 631)

Name: NF13298_low_2
Description: NF13298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13298_low_2
NF13298_low_2
[»] chr5 (7 HSPs)
chr5 (11-612)||(2210327-2210928)
chr5 (224-516)||(2198208-2198500)
chr5 (11-69)||(2198575-2198633)
chr5 (525-594)||(11727311-11727380)
chr5 (88-117)||(37455439-37455468)
chr5 (117-145)||(34384702-34384730)
chr5 (88-116)||(41330455-41330483)
[»] chr8 (3 HSPs)
chr8 (515-607)||(33948369-33948461)
chr8 (88-145)||(1961372-1961427)
chr8 (88-116)||(16983484-16983512)
[»] chr1 (4 HSPs)
chr1 (515-612)||(47680279-47680376)
chr1 (515-607)||(31704723-31704815)
chr1 (116-145)||(22540504-22540533)
chr1 (88-116)||(30678973-30679001)
[»] chr3 (2 HSPs)
chr3 (542-612)||(26453444-26453514)
chr3 (88-116)||(29388656-29388684)
[»] chr7 (3 HSPs)
chr7 (88-116)||(31502526-31502554)
chr7 (88-116)||(44350864-44350892)
chr7 (88-116)||(46517381-46517409)
[»] chr4 (2 HSPs)
chr4 (117-145)||(19447273-19447301)
chr4 (88-116)||(50164485-50164513)
[»] chr2 (1 HSPs)
chr2 (117-153)||(38464304-38464340)


Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 612
Target Start/End: Complemental strand, 2210928 - 2210327
Alignment:
Q  11 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaataaacagaatatgatctagttcaattttcaaagtgtagact 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210928 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaataaacagaatatgatctagttcaattttcaaagtgtagact 2210829  T
Q  111 caca--atagtattaaagagagtgttcaaaagagagtatagctagtcttactcaatctactaattatgtacatagaa-gaagnnnnnnnngaaatgaaga 207  Q
    ||||  ||||||||||||||||            ||| ||||||||||||||||||||||||||||||||||||||| |||         ||||||||||    
T  2210828 cacacaatagtattaaagagag------------agtgtagctagtcttactcaatctactaattatgtacatagaaagaa-----aaatgaaatgaaga 2210746  T
Q  208 ttaaataaggaacgaataaattcaactcaagtcatgacagtatgaaatcgacatggaaaattga---aatgaacattgatttgcatcgaaa--------- 295  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||| ||||  ||||  ||||||||   |||||| || ||||||||||||||             
T  2210745 ttaaataaggaacgaataacttcaactcaagtcatcacactatcaaattcacat--aaaattgatgaaatgaatatagatttgcatcgaaataaagatga 2210648  T
Q  296 ----ctaaccgaaaaacatcccagcaactatcaagaccaggaataggaggaggaaaaccatctttagcgaagatgctacgataagcaggtcctcttgaag 391  Q
        ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2210647 aaaactaaccgaaaaacatcccagcaactatcaagaccaagaataggaggaggaaaaccatctttagcgaagatgctacgatacgcaggtcctcttgaag 2210548  T
Q  392 gtttatcctccgttgctgccttcgctttttcaacctcaatgatgaatcttttctgcgccatgtctcaacaacgatcgcgaagagaaaaatggttaagtta 491  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||||||||||||||    
T  2210547 gtttatcttccgttgcttccttcgctttttcaacctcaatgatgaatcttttctgcgccatggctcaacgatgatcgcgatgagaaaaatggttaagtta 2210448  T
Q  492 agcggagaatgagaaattttaaatgttatttcttagtgttcttataatacaagaacatgtgtttatgttgtatgcattggagatcaataaggtggatgac 591  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2210447 agcggagaatgagaaattttaaatgttatttcttagtgttcttagaatacaagaacatgtgcttatgttgtatgcattggagatcaataaggtggatgac 2210348  T
Q  592 actgtagagaacagttctccc 612  Q
    |||||||||||||||||||||    
T  2210347 actgtagagaacagttctccc 2210327  T

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Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 224 - 516
Target Start/End: Complemental strand, 2198500 - 2198208
Alignment:
Q  224 taaattcaactcaagtcatgacagtatgaaatcgacatggaaaattgaaatgaacattgatttgcatcgaaactaaccgaaaaacatcccagcaactatc 323  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2198500 taaattcaactcaagtcatgacactatgaaatcgacatggaaaattgaaatgaacattgatttgcatcgaaactaaccgaaaaacatcccagcaactatc 2198401  T
Q  324 aagaccaggaataggaggaggaaaaccatctttagcgaagatgctacgataagcaggtcctcttgaaggtttatcctccgttgctgccttcgctttttca 423  Q
    |||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2198400 aagaccaggaataggaggaggaaatccatccttagcgaagatactgcgatacgcaggtcctcttgaaggtttatcctccgttgctgccttcgctttttca 2198301  T
Q  424 acctcaatgatgaatcttttctgcgccatgtctcaacaacgatcgcgaagagaaaaatggttaagttaagcggagaatgagaaattttaaatg 516  Q
    ||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2198300 acctcaatgatgaatctttcctgcgccatggctcaataacgatagcgaagagaaaaatggttaagttaagcggagaatgagaaattttaaatg 2198208  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 2198633 - 2198575
Alignment:
Q  11 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaa 69  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||| |||||    
T  2198633 cagagagctctgatttgaaaattagcataaaaattaaacgaaaattaaattaaattaaa 2198575  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 594
Target Start/End: Complemental strand, 11727380 - 11727311
Alignment:
Q  525 tagtgttcttataatacaagaacatgtgtttatgttgtatgcattggagatcaataaggtggatgacact 594  Q
    |||||||||||  |  ||||||||| | |||||||| |||||||||||||||||| || |||||| ||||    
T  11727380 tagtgttcttagcaatcaagaacatatttttatgttatatgcattggagatcaatgagttggatgccact 11727311  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 37455439 - 37455468
Alignment:
Q  88 gttcaattttcaaagtgtagactcacaata 117  Q
    ||||||||||||||||||||||||||||||    
T  37455439 gttcaattttcaaagtgtagactcacaata 37455468  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 34384730 - 34384702
Alignment:
Q  117 agtattaaagagagtgttcaaaagagagt 145  Q
    |||||||||||||||||||||||||||||    
T  34384730 agtattaaagagagtgttcaaaagagagt 34384702  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 41330483 - 41330455
Alignment:
Q  88 gttcaattttcaaagtgtagactcacaat 116  Q
    |||||||||||||||||||||||||||||    
T  41330483 gttcaattttcaaagtgtagactcacaat 41330455  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 515 - 607
Target Start/End: Original strand, 33948369 - 33948461
Alignment:
Q  515 tgttatttcttagtgttcttataatacaagaacatgtgtttatgttgtatgcattggagatcaataaggtggatgacactgtagagaacagtt 607  Q
    |||| ||||||||||||||||  | |||||||||| | |||||||| |||| ||||||||||||| |||||||||||||||| ||||| ||||    
T  33948369 tgttctttcttagtgttcttagcaaacaagaacatatttttatgttctatgtattggagatcaatgaggtggatgacactgtggagaatagtt 33948461  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 1961372 - 1961427
Alignment:
Q  88 gttcaattttcaaagtgtagactcacaatagtattaaagagagtgttcaaaagagagt 145  Q
    ||||||||||||||||||||||  ||||||  |||| |||||||||||||||||||||    
T  1961372 gttcaattttcaaagtgtagaccaacaata--attagagagagtgttcaaaagagagt 1961427  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 16983484 - 16983512
Alignment:
Q  88 gttcaattttcaaagtgtagactcacaat 116  Q
    |||||||||||||||||||||||||||||    
T  16983484 gttcaattttcaaagtgtagactcacaat 16983512  T

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Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 515 - 612
Target Start/End: Original strand, 47680279 - 47680376
Alignment:
Q  515 tgttatttcttagtgttcttataatacaagaacatgtgtttatgttgtatgcattggagatcaataaggtggatgacactgtagagaacagttctccc 612  Q
    |||| |||||| |||||||||  | |||||||||| | ||||| || |||||||||||||||||| || ||||||||| ||| |||||||||||||||    
T  47680279 tgttctttcttggtgttcttagcaaacaagaacatatttttatattttatgcattggagatcaatgagctggatgacattgtggagaacagttctccc 47680376  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 515 - 607
Target Start/End: Original strand, 31704723 - 31704815
Alignment:
Q  515 tgttatttcttagtgttcttataatacaagaacatgtgtttatgttgtatgcattggagatcaataaggtggatgacactgtagagaacagtt 607  Q
    |||| ||||||||| ||||||  | |||||||||| | ||||||||||||||||||||||||  | || ||||||||||||| ||||| ||||    
T  31704723 tgttctttcttagtattcttagcaaacaagaacatatttttatgttgtatgcattggagatcgttgagctggatgacactgtggagaatagtt 31704815  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 22540504 - 22540533
Alignment:
Q  116 tagtattaaagagagtgttcaaaagagagt 145  Q
    ||||||||||||||||||||||||||||||    
T  22540504 tagtattaaagagagtgttcaaaagagagt 22540533  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 30679001 - 30678973
Alignment:
Q  88 gttcaattttcaaagtgtagactcacaat 116  Q
    |||||||||||||||||||||||||||||    
T  30679001 gttcaattttcaaagtgtagactcacaat 30678973  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 612
Target Start/End: Complemental strand, 26453514 - 26453444
Alignment:
Q  542 aagaacatgtgtttatgttgtatgcattggagatcaataaggtggatgacactgtagagaacagttctccc 612  Q
    |||||||| | |||||||| |||| ||||||||||||  || |||||||| |||| ||||||| |||||||    
T  26453514 aagaacatatttttatgttttatgtattggagatcaacgagctggatgaccctgtggagaacaattctccc 26453444  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 29388684 - 29388656
Alignment:
Q  88 gttcaattttcaaagtgtagactcacaat 116  Q
    |||||||||||||||||||||||||||||    
T  29388684 gttcaattttcaaagtgtagactcacaat 29388656  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 31502554 - 31502526
Alignment:
Q  88 gttcaattttcaaagtgtagactcacaat 116  Q
    |||||||||||||||||||||||||||||    
T  31502554 gttcaattttcaaagtgtagactcacaat 31502526  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 44350892 - 44350864
Alignment:
Q  88 gttcaattttcaaagtgtagactcacaat 116  Q
    |||||||||||||||||||||||||||||    
T  44350892 gttcaattttcaaagtgtagactcacaat 44350864  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 46517381 - 46517409
Alignment:
Q  88 gttcaattttcaaagtgtagactcacaat 116  Q
    |||||||||||||||||||||||||||||    
T  46517381 gttcaattttcaaagtgtagactcacaat 46517409  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 19447273 - 19447301
Alignment:
Q  117 agtattaaagagagtgttcaaaagagagt 145  Q
    |||||||||||||||||||||||||||||    
T  19447273 agtattaaagagagtgttcaaaagagagt 19447301  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 50164485 - 50164513
Alignment:
Q  88 gttcaattttcaaagtgtagactcacaat 116  Q
    |||||||||||||||||||||||||||||    
T  50164485 gttcaattttcaaagtgtagactcacaat 50164513  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 38464304 - 38464340
Alignment:
Q  117 agtattaaagagagtgttcaaaagagagtatagctag 153  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  38464304 agtattagagagagtgttcaaaagagagtattgctag 38464340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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