View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13298_low_4 (Length: 434)

Name: NF13298_low_4
Description: NF13298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13298_low_4
NF13298_low_4
[»] chr7 (2 HSPs)
chr7 (11-417)||(38969272-38969673)
chr7 (362-413)||(8375792-8375843)
[»] chr6 (3 HSPs)
chr6 (352-412)||(16910007-16910067)
chr6 (323-417)||(22258478-22258568)
chr6 (362-412)||(11681363-11681413)
[»] chr2 (2 HSPs)
chr2 (353-411)||(37965190-37965248)
chr2 (324-398)||(25550214-25550284)
[»] chr4 (2 HSPs)
chr4 (258-309)||(50887410-50887461)
chr4 (324-412)||(9010312-9010396)
[»] chr1 (1 HSPs)
chr1 (317-417)||(12466082-12466178)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 38969673 - 38969272
Alignment:
Q  11 cagagacagctggtttattttgtgttccataaagcaatcaacattcaacaggcttctatctttaaggagacaactagtacttaactgctgttaattaatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38969673 cagagacagctggtttattttgtgttccataaagcaatcaacattcaacaggcttctatctttaaggagacaactagtacttaactgctgttaattaatg 38969574  T
Q  111 aaatcttcaagttcatgcaactcttttcctttcaccactgacttcaacctggctgtaaaaataacttctaaaatttggtccattggtttctcttttgttt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38969573 aaatcttcaagttcatgcaactcttttcctttcaccactgacttcaacctggctgtaaaaataacttctaaaatttggtccattggtttctcttttgttt 38969474  T
Q  211 tttgtcatttgttaaataaattttcaaaataaggaacttagatgtctttacactaatagttagtggtgtttgctataactggtattacctctactatttt 310  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||      
T  38969473 tttgtgatttgttaagtaaattttcaaaataaggaacttagatgtctttacactaatagttagtggtttttgctataactggtattacctctactattc- 38969375  T
Q  311 gatggcatcatcaattatagtagaattcttttcagtggctcgctctgcccatggattagtcagcatatgactggataccacgttaaatcttgtgtcgttt 410  Q
    |||||||| ||||||||||||||||||||||||||||||||     ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  38969374 gatggcattatcaattatagtagaattcttttcagtggctcc----gcccatggattagtcagcacatggctggataccacgttaaatcttgtgtcgttt 38969279  T
Q  411 ttattat 417  Q
    |||||||    
T  38969278 ttattat 38969272  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 413
Target Start/End: Complemental strand, 8375843 - 8375792
Alignment:
Q  362 tggattagtcagcatatgactggataccacgttaaatcttgtgtcgttttta 413  Q
    |||||||||||||| ||  |||||||||||||||||| ||||||| ||||||    
T  8375843 tggattagtcagcacattgctggataccacgttaaattttgtgtcattttta 8375792  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 352 - 412
Target Start/End: Complemental strand, 16910067 - 16910007
Alignment:
Q  352 gctctgcccatggattagtcagcatatgactggataccacgttaaatcttgtgtcgttttt 412  Q
    ||||| |||||||| ||||||||| ||  ||||||||||||||||||||||||||||||||    
T  16910067 gctctacccatggaatagtcagcacattgctggataccacgttaaatcttgtgtcgttttt 16910007  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 417
Target Start/End: Original strand, 22258478 - 22258568
Alignment:
Q  323 aattatagtagaattcttttcagtggctcgctctgcccatggattagtcagcatatgactggataccacgttaaatcttgtgtcgtttttattat 417  Q
    ||||||||| |||||||||| ||||||||    ||| | ||||||||||| || ||  |||||||||||||| ||| |||||||||||| |||||    
T  22258478 aattatagtggaattcttttaagtggctc----tgctcgtggattagtcaacacattgctggataccacgtttaatgttgtgtcgttttcattat 22258568  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 11681413 - 11681363
Alignment:
Q  362 tggattagtcagcatatgactggataccacgttaaatcttgtgtcgttttt 412  Q
    |||||||||||||| ||   || ||||||||||||||||||||||||||||    
T  11681413 tggattagtcagcacattgatgcataccacgttaaatcttgtgtcgttttt 11681363  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 353 - 411
Target Start/End: Complemental strand, 37965248 - 37965190
Alignment:
Q  353 ctctgcccatggattagtcagcatatgactggataccacgttaaatcttgtgtcgtttt 411  Q
    |||||||||||||||||||| | |||   ||||||||||||||||||||||||||||||    
T  37965248 ctctgcccatggattagtcaccttattgttggataccacgttaaatcttgtgtcgtttt 37965190  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 398
Target Start/End: Original strand, 25550214 - 25550284
Alignment:
Q  324 attatagtagaattcttttcagtggctcgctctgcccatggattagtcagcatatgactggataccacgttaaat 398  Q
    ||||||||||||||||||||||||||||    |||   ||||||||||||||||   ||||||||||| ||||||    
T  25550214 attatagtagaattcttttcagtggctc----tgcatgtggattagtcagcataatgctggataccaccttaaat 25550284  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 50887461 - 50887410
Alignment:
Q  258 ttacactaatagttagtggtgtttgctataactggtattacctctactattt 309  Q
    |||||||||||||||||||  ||||||||| || ||||||||||||||||||    
T  50887461 ttacactaatagttagtgggttttgctatagctagtattacctctactattt 50887410  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 412
Target Start/End: Complemental strand, 9010396 - 9010312
Alignment:
Q  324 attatagtagaattcttttcagtggctcgctctgcccatggattagtcagcatatgactggataccacgttaaatcttgtgtcgttttt 412  Q
    |||||||| |||||||||||||||||||    ||||| |||||||  ||||| ||   |||||||||| ||||||||||||| ||||||    
T  9010396 attatagtggaattcttttcagtggctc----tgcccgtggattatgcagcacattgttggataccacattaaatcttgtgttgttttt 9010312  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 417
Target Start/End: Original strand, 12466082 - 12466178
Alignment:
Q  317 atcatcaattatagtagaattcttttcagtggctcgctctgcccatggattagtcagcatatgactggataccacgttaaatcttgtgtcgtttttatta 416  Q
    ||||| ||||||||| |||||||||||| ||||||    ||||| || ||||||||||| ||   ||||||||||||| ||||||||| |||||| ||||    
T  12466082 atcattaattatagtggaattcttttcaatggctc----tgcccgtgaattagtcagcacattgatggataccacgtttaatcttgtgccgttttcatta 12466177  T

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