View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13298_low_5 (Length: 394)

Name: NF13298_low_5
Description: NF13298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13298_low_5
NF13298_low_5
[»] chr3 (15 HSPs)
chr3 (18-389)||(30987354-30987725)
chr3 (18-183)||(22106941-22107108)
chr3 (80-183)||(21947857-21947959)
chr3 (18-98)||(22036840-22036920)
chr3 (29-98)||(22117408-22117477)
chr3 (80-183)||(22030249-22030351)
chr3 (80-183)||(22189237-22189339)
chr3 (103-369)||(21939207-21939470)
chr3 (80-175)||(22054957-22055050)
chr3 (254-297)||(21947765-21947808)
chr3 (251-297)||(22181540-22181586)
chr3 (80-143)||(22181671-22181735)
chr3 (266-297)||(21932556-21932587)
chr3 (266-297)||(22106849-22106880)
chr3 (253-297)||(22054837-22054881)
[»] chr8 (1 HSPs)
chr8 (29-96)||(29894117-29894184)
[»] chr2 (1 HSPs)
chr2 (29-92)||(38571075-38571138)
[»] chr1 (1 HSPs)
chr1 (46-96)||(30533835-30533885)


Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 30987354 - 30987725
Alignment:
Q  18 cataacagtgcctcataattggtgatgctgagttcaaataataaagcataaaacagaagacaaataaagcttgtattttgaggactgaacattaaaaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30987354 cataacagtgcctcataattggtgatgctgagttcaaataataaagcataaaacagaagacaaataaagcttgtattttgaggactgaacattaaaaatt 30987453  T
Q  118 ctcatgctatggaaaacattaaatattagtaccgaaaataagtttttaggaagaaaaaacacacctttttcctgagtatgataaagcacaatttctaatt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30987454 ctcatgctatggaaaacattaaatattagtaccgaaaataagtttttaggaagaaaaaacacacctttttcctgagtatgataaggcacaatttctaatt 30987553  T
Q  218 ccttgagttacgaataatctttccatcgactctagaaatttctacaaggggcacatgctccatgatccaattccaatccttgggagagttgtgctgcaaa 317  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30987554 ccttgagttccgaataatctttccatcgactctagagatttctacaaggggcacatgctccatgatccaattccaatccttgggagagttgtgctgcaaa 30987653  T
Q  318 acttcaacttgcatactccgaattaggagaacttcaagcttctctaaatgttggatgccggtgatattcttc 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30987654 acttcaacttgcatactccgaattaggagaacttcaagcttctctaaatgttggatgccggtgatattcttc 30987725  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 22107108 - 22106941
Alignment:
Q  18 cataacagtgcctcataattggtgatgctgagttcaaataataaagcataaaacagaagacaaataaagcttgtattttgaggactgaacattaaaaatt 117  Q
    ||||||||  ||||||| |||| ||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| ||||  ||||||||| ||    
T  22107108 cataacagaacctcatacttggcgatgctgagttaaaataataaagcataaaactgaagaaaaataaaacttgtattttgatgactatacattaaaattt 22107009  T
Q  118 ctcatgc-tatggaaaacattaaatattagtaccg--aaaataagtttttaggaagaaaaaacacacct 183  Q
    ||||||| ||||||||| | |||||||||||||||  |||||||| || ||||||||||||||||||||    
T  22107008 ctcatgcatatggaaaatagtaaatattagtaccgaaaaaataag-ttataggaagaaaaaacacacct 22106941  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 21947959 - 21947857
Alignment:
Q  80 aataaagcttgtattttgaggactgaacattaaaaattctcatgc-tatggaaaacattaaatattagtaccgaaaataagtttttaggaagaaaaaaca 178  Q
    ||||||||||||||||||| || |||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||  || |||||||||||| ||    
T  21947959 aataaagcttgtattttgatgaatgaacattaaaaattctcatgcatatggaaaatagtaaatattagtacc-aaaataa-attataggaagaaaaagca 21947862  T
Q  179 cacct 183  Q
    |||||    
T  21947861 cacct 21947857  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 22036920 - 22036840
Alignment:
Q  18 cataacagtgcctcataattggtgatgctgagttcaaataataaagcataaaacagaagacaaataaagcttgtattttga 98  Q
    ||||||||  |||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  22036920 cataacagaacctcataattggcgatgctgagttaaaataataaagcataaaactgaagaaaaataaaacttgtattttga 22036840  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 22117477 - 22117408
Alignment:
Q  29 ctcataattggtgatgctgagttcaaataataaagcataaaacagaagacaaataaagcttgtattttga 98  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  22117477 ctcataattggcgatgctgagttaaaataataaagcataaaactgaagaaaaataaaacttgtattttga 22117408  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 22030351 - 22030249
Alignment:
Q  80 aataaagcttgtattttgaggactgaacattaaaaattctcatgc-tatggaaaacattaaatattagtaccgaaaataagtttttaggaagaaaaaaca 178  Q
    ||||||||||||||||||| || || ||||| ||||||||||| | ||||||||||| |||||||||||| | |||||||| || |||||||||||| ||    
T  22030351 aataaagcttgtattttgatgaatggacattcaaaattctcatacatatggaaaacagtaaatattagta-caaaaataag-ttataggaagaaaaagca 22030254  T
Q  179 cacct 183  Q
    |||||    
T  22030253 cacct 22030249  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 22189339 - 22189237
Alignment:
Q  80 aataaagcttgtattttgaggactgaacattaaaaattctcatgc-tatggaaaacattaaatattagtaccgaaaataagtttttaggaagaaaaaaca 178  Q
    ||||||||||||||||||| || || ||||| ||||||||||| | ||||||||||| |||||||||||| | |||||||| || |||||||||||| ||    
T  22189339 aataaagcttgtattttgatgaatggacattcaaaattctcatacatatggaaaacagtaaatattagta-caaaaataag-ttataggaagaaaaagca 22189242  T
Q  179 cacct 183  Q
    |||||    
T  22189241 cacct 22189237  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 369
Target Start/End: Complemental strand, 21939470 - 21939207
Alignment:
Q  103 tgaacattaaaaattctcatgc---tatggaaaacattaaatattagtaccgaaaa-taagtttttaggaagaaaaaacacacctttttcctgagtatga 198  Q
    ||||||||||||||||||||||   ||||| ||||| || ||||||||||  |||| |||||| | ||||||||||| |||||||       ||||||||    
T  21939470 tgaacattaaaaattctcatgcatatatgggaaacagtagatattagtacgaaaaaataagttat-aggaagaaaaagcacaccta------gagtatga 21939378  T
Q  199 taaagcacaatttctaattccttgagttacgaataatctttccatcgactctagaa---atttctacaaggggcacatgctccatgatccaattccaatc 295  Q
    ||||||   |||||||| ||||||||||  ||||  |||| |||  |||||| |||   |||| |||||| | |||||||||||||||||||||||||||    
T  21939377 taaagcgttatttctaactccttgagttttgaatt-tcttccca--gactctggaataaatttttacaagcgccacatgctccatgatccaattccaatc 21939281  T
Q  296 cttgggagagttgtgctgcaaaacttcaacttgcatactccgaattaggagaacttcaagcttctctaaatgtt 369  Q
    || || ||   || |||||| || |||||||| || || || |||   |||| |||||||||||||||| ||||    
T  21939280 ctcggtaggaatgcgctgcacaaattcaacttccacaccccaaatatagagatcttcaagcttctctaagtgtt 21939207  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 22055050 - 22054957
Alignment:
Q  80 aataaagcttgtattttgaggactgaacattaaaaattctcatgc-tatggaaaacattaaatattagtaccgaaaataagtttttaggaagaaaaa 175  Q
    ||||| ||||||||||||| || ||||||||||||||| |||||| ||||||||||| ||||||| |||| | |||||||| || ||||||||||||    
T  22055050 aataatgcttgtattttgatgaatgaacattaaaaatt-tcatgcatatggaaaacagtaaatataagta-caaaaataag-ttataggaagaaaaa 22054957  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 21947808 - 21947765
Alignment:
Q  254 aatttctacaaggggcacatgctccatgatccaattccaatcct 297  Q
    ||||| |||||||||||| |||||||||||||||||||||||||    
T  21947808 aatttttacaaggggcacgtgctccatgatccaattccaatcct 21947765  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 22181586 - 22181540
Alignment:
Q  251 agaaatttctacaaggggcacatgctccatgatccaattccaatcct 297  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||    
T  22181586 agaaattgttacaaggggcacatgttccatgatccaattccaatcct 22181540  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 22181735 - 22181671
Alignment:
Q  80 aataaagcttgtattttgaggactgaacattaaaaattctcatgc-tatggaaaacattaaatat 143  Q
    |||||||| |||||||||| || ||||||| ||||||||||||||  |||||||||| |||||||    
T  22181735 aataaagcatgtattttgatgaatgaacatcaaaaattctcatgcaaatggaaaacagtaaatat 22181671  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 297
Target Start/End: Complemental strand, 21932587 - 21932556
Alignment:
Q  266 gggcacatgctccatgatccaattccaatcct 297  Q
    ||||||||||||||||||||||||||||||||    
T  21932587 gggcacatgctccatgatccaattccaatcct 21932556  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 297
Target Start/End: Complemental strand, 22106880 - 22106849
Alignment:
Q  266 gggcacatgctccatgatccaattccaatcct 297  Q
    ||||||||||||||||||||||||||||||||    
T  22106880 gggcacatgctccatgatccaattccaatcct 22106849  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 22054881 - 22054837
Alignment:
Q  253 aaatttctacaaggggcacatgctccatgatccaattccaatcct 297  Q
    |||||| |||| |||||||||| |||| |||||||||||||||||    
T  22054881 aaatttttacagggggcacatgatccaagatccaattccaatcct 22054837  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 29894117 - 29894184
Alignment:
Q  29 ctcataattggtgatgctgagttcaaataataaagcataaaacagaagacaaataaagcttgtatttt 96  Q
    ||||||||||| |||| |||||| ||||||||||||||| ||||||||| ||||||| ||||||||||    
T  29894117 ctcataattggcgatgttgagttgaaataataaagcatataacagaagaaaaataaaacttgtatttt 29894184  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 38571138 - 38571075
Alignment:
Q  29 ctcataattggtgatgctgagttcaaataataaagcataaaacagaagacaaataaagcttgta 92  Q
    ||||||||||| |||| |||||| ||||||||||||||| |||| ||||  |||||| ||||||    
T  38571138 ctcataattggcgatgttgagttgaaataataaagcatataacaaaagaagaataaaacttgta 38571075  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 30533885 - 30533835
Alignment:
Q  46 tgagttcaaataataaagcataaaacagaagacaaataaagcttgtatttt 96  Q
    |||||| ||||||||||||||| ||||||||| ||||||| ||| ||||||    
T  30533885 tgagttgaaataataaagcatataacagaagaaaaataaaacttatatttt 30533835  T

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