View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13298_low_7 (Length: 362)
Name: NF13298_low_7
Description: NF13298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13298_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 31173148 - 31173502
Alignment:
| Q |
9 |
agcagagaagaagacgaagaaagaagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgt |
108 |
Q |
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| T |
31173148 |
agcagagaagaagacgaagaaagtagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgt |
31173247 |
T |
|
| Q |
109 |
tttgatttcaattcattcttttt---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaa |
193 |
Q |
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| T |
31173248 |
ttcgatttcaattcattctttttctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaa |
31173347 |
T |
|
| Q |
194 |
ttgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttatt |
293 |
Q |
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| T |
31173348 |
ttgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttatt |
31173447 |
T |
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| Q |
294 |
gcttcagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggt |
348 |
Q |
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| T |
31173448 |
gcttcagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggt |
31173502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 31227306 - 31226952
Alignment:
| Q |
9 |
agcagagaagaagacgaagaaagaagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgt |
108 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31227306 |
agcagagaagaagacgaagaaagtagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgt |
31227207 |
T |
|
| Q |
109 |
tttgatttcaattcattcttttt---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaa |
193 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
31227206 |
ttcgatttcaattcattctttttctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaa |
31227107 |
T |
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| Q |
194 |
ttgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttatt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31227106 |
ttgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttatt |
31227007 |
T |
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| Q |
294 |
gcttcagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggt |
348 |
Q |
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| T |
31227006 |
gcttcagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggt |
31226952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 175 - 348
Target Start/End: Complemental strand, 31232371 - 31232198
Alignment:
| Q |
175 |
cagatgattaaggatgcaattgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttcctt |
274 |
Q |
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|||||||||||||||||||||||| | |||| ||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31232371 |
cagatgattaaggatgcaattgtgactttgaaagagagaactggttcaagtcaatttgcaattgcgaaattcattgaagagaaacacaaacagcttcctt |
31232272 |
T |
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| Q |
275 |
caaatttcaagaagttattgcttcagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggt |
348 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||| ||||||| |||||| |
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| T |
31232271 |
caaatttcaagaagctattgcttcataatttgaagaagaacgttgcttctggaaagcttattaaggttaaaggt |
31232198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 32797831 - 32798194
Alignment:
| Q |
9 |
agcagagaagaagacgaagaaagaagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgt |
108 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32797831 |
agcagagaagaagacgaagaaagtagcgaaggaatccaaacctaagaaagcttccaaaccacgaaaccctgcttctcatcctacttacgaagaggttcgt |
32797930 |
T |
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| Q |
109 |
tttgatt-tcaattca-----------ttctt---tttgttacaaattatagtttcaattggatctaattt-----------gaacgaattgcagatgat |
182 |
Q |
| |
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|| ||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||| | ||||||||||| |
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| T |
32797931 |
ttcaattctcaattcactcctttctaattcttagttttgttacgaattatagtttcaattggatctaattttttattgatttgaacaatttgcagatgat |
32798030 |
T |
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| Q |
183 |
taaggatgcaattgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattc-atcgaagagaaacacaaacagcttccttcaaattt |
281 |
Q |
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||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||| |||||| || ||||||||||||||||||||||| |||||||| |
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| T |
32798031 |
taaggatgcaattgtatctctgaaggataggacgggttcaagccaatatgcgattgcaaaattcaattgaagagaaacacaaacagcttccatcaaattt |
32798130 |
T |
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| Q |
282 |
caagaagttattgcttcagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggt |
348 |
Q |
| |
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|||||| |||||| |||||| ||| ||||||||||||||||||||| || ||||||||||||||| |
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| T |
32798131 |
caagaaattattgtttcagagttt---gaagaatgttgcttctggaaagctcgttaaggtgaaaggt |
32798194 |
T |
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