View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13298_low_8 (Length: 331)

Name: NF13298_low_8
Description: NF13298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13298_low_8
NF13298_low_8
[»] chr4 (8 HSPs)
chr4 (203-311)||(24482075-24482183)
chr4 (206-311)||(24481841-24481946)
chr4 (206-311)||(24481973-24482078)
chr4 (203-300)||(24481750-24481847)
chr4 (209-311)||(24481667-24481769)
chr4 (203-288)||(24481588-24481673)
chr4 (269-311)||(24481943-24481985)
chr4 (261-306)||(24481442-24481487)
[»] chr1 (66 HSPs)
chr1 (12-90)||(11905314-11905392)
chr1 (12-88)||(11882373-11882449)
chr1 (12-88)||(11891607-11891683)
chr1 (12-90)||(11882469-11882547)
chr1 (12-90)||(11891703-11891781)
chr1 (12-88)||(11905458-11905534)
chr1 (18-90)||(52818788-52818860)
chr1 (18-87)||(52818599-52818668)
chr1 (12-88)||(11905266-11905342)
chr1 (18-88)||(11882619-11882689)
chr1 (18-88)||(11891853-11891923)
chr1 (23-88)||(11882336-11882401)
chr1 (23-88)||(11882432-11882497)
chr1 (23-88)||(11891570-11891635)
chr1 (23-88)||(11891666-11891731)
chr1 (20-88)||(11882669-11882737)
chr1 (20-88)||(11889624-11889692)
chr1 (29-88)||(11880177-11880236)
chr1 (29-88)||(11880273-11880332)
chr1 (29-88)||(11902773-11902832)
chr1 (18-88)||(11880070-11880140)
chr1 (23-79)||(11892002-11892058)
chr1 (29-88)||(11879793-11879852)
chr1 (29-88)||(11902581-11902640)
chr1 (29-88)||(11902677-11902736)
chr1 (29-88)||(52818838-52818897)
chr1 (20-87)||(52821338-52821405)
chr1 (18-87)||(11879665-11879734)
chr1 (23-84)||(11882816-11882877)
chr1 (23-75)||(11905613-11905665)
chr1 (20-84)||(52818554-52818618)
chr1 (20-87)||(11879619-11879686)
chr1 (29-88)||(11879937-11879996)
chr1 (29-87)||(11889777-11889835)
chr1 (18-88)||(11905176-11905246)
chr1 (20-88)||(11879832-11879900)
chr1 (20-84)||(11882717-11882781)
chr1 (20-88)||(11888232-11888300)
chr1 (20-88)||(11888280-11888348)
chr1 (20-88)||(11888328-11888396)
chr1 (20-88)||(11888376-11888444)
chr1 (20-88)||(11888424-11888492)
chr1 (20-88)||(11888472-11888540)
chr1 (20-88)||(11888520-11888588)
chr1 (20-88)||(11888568-11888636)
chr1 (20-88)||(11888616-11888684)
chr1 (20-88)||(11888664-11888732)
chr1 (20-88)||(11888712-11888780)
chr1 (20-88)||(11888760-11888828)
chr1 (20-88)||(11888808-11888876)
chr1 (20-88)||(11888856-11888924)
chr1 (20-88)||(11888904-11888972)
chr1 (20-88)||(11888952-11889020)
chr1 (20-88)||(11889000-11889068)
chr1 (20-88)||(11889048-11889116)
chr1 (20-88)||(11889096-11889164)
chr1 (20-88)||(11889144-11889212)
chr1 (20-88)||(11889192-11889260)
chr1 (20-88)||(11889240-11889308)
chr1 (20-88)||(11889288-11889356)
chr1 (20-88)||(11889336-11889404)
chr1 (20-88)||(11889384-11889452)
chr1 (20-88)||(11889432-11889500)
chr1 (20-88)||(11889480-11889548)
chr1 (29-81)||(52818941-52818993)
chr1 (20-84)||(52821293-52821357)
[»] scaffold1918 (1 HSPs)
scaffold1918 (20-87)||(7-74)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 24482183 - 24482075
Alignment:
Q  203 tatgtgtacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccgccacctccatatgtatacaagtcacccccacctcctc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24482183 tatgtgtacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccgccacctccatatgtatacaagtcacccccacctcctc 24482084  T
Q  303 catacgtgt 311  Q
    |||||||||    
T  24482083 catacgtgt 24482075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 206 - 311
Target Start/End: Complemental strand, 24481946 - 24481841
Alignment:
Q  206 gtgtacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccgccacctccatatgtatacaagtcacccccacctcctccat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||    
T  24481946 gtgtacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccacctcctccatatgtgtacaagtcacccccacctcctccat 24481847  T
Q  306 acgtgt 311  Q
    | ||||    
T  24481846 atgtgt 24481841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 206 - 311
Target Start/End: Complemental strand, 24482078 - 24481973
Alignment:
Q  206 gtgtacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccgccacctccatatgtatacaagtcacccccacctcctccat 305  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||    
T  24482078 gtgtacaagtcaccacctcctccaccttacgtttacccgtctcctcctccaccatcaccacctcctccgtatgtatacaagtcaccgccacctcctccat 24481979  T
Q  306 acgtgt 311  Q
    | ||||    
T  24481978 atgtgt 24481973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 24481847 - 24481750
Alignment:
Q  203 tatgtgtacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccgccacctccatatgtatacaagtcacccccacctcc 300  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||| ||||| || |||||    
T  24481847 tatgtgtacaagtcaccacctcctccaccttacgtttacccgtctcctcctccaccatcaccacctcctccatacgtatacaaatcaccacctcctcc 24481750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 311
Target Start/End: Complemental strand, 24481769 - 24481667
Alignment:
Q  209 tacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccgccacctccatatgtatacaagtcacccccacctcctccatacg 308  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||| | ||||| |||||||||||||||||||| |    
T  24481769 tacaaatcaccacctcctccaccttatgtttacccatctcctcctccaccatcgcctcctcctccatatatctacaaatcacccccacctcctccatatg 24481670  T
Q  309 tgt 311  Q
    |||    
T  24481669 tgt 24481667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 24481673 - 24481588
Alignment:
Q  203 tatgtgtacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccgccacctccatatgtatacaagtc 288  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| | ||||||||    
T  24481673 tatgtgtataagtcaccacctcctccaccttatgtttacccatctcctcctccaccatcaccacctcctccatatatctacaagtc 24481588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 24481985 - 24481943
Alignment:
Q  269 cctccatatgtatacaagtcacccccacctcctccatacgtgt 311  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  24481985 cctccatatgtgtacaagtcacccccacctcctccatacgtgt 24481943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 24481487 - 24481442
Alignment:
Q  261 caccgccacctccatatgtatacaagtcacccccacctcctccata 306  Q
    |||| ||||| |||||||| ||||||||||| ||||||||||||||    
T  24481487 cacctccaccaccatatgtctacaagtcaccgccacctcctccata 24481442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 66)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 11905314 - 11905392
Alignment:
Q  12 catcatcaccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaaag 90  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11905314 catcaccaccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaaag 11905392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 11882373 - 11882449
Alignment:
Q  12 catcatcaccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  11882373 catcaccaccacctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattacaaa 11882449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 11891607 - 11891683
Alignment:
Q  12 catcatcaccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  11891607 catcaccaccacctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattacaaa 11891683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 11882469 - 11882547
Alignment:
Q  12 catcatcaccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaaag 90  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  11882469 catcaccaccacctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatactactacaaaag 11882547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 11891703 - 11891781
Alignment:
Q  12 catcatcaccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaaag 90  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  11891703 catcaccaccacctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatactactacaaaag 11891781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 11905458 - 11905534
Alignment:
Q  12 catcatcaccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| |||| |||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||    
T  11905458 catcaccaccccctccctactattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaa 11905534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 52818860 - 52818788
Alignment:
Q  18 caccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaaag 90  Q
    |||||||||| || || ||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  52818860 caccacctccttattactacaaatcacctccaccaccaaccccatcacctccacctccatactactacaaaag 52818788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 52818668 - 52818599
Alignment:
Q  18 caccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaa 87  Q
    |||||||||||||||| ||||||||||||||||||||||| || || ||||||||||| ||||| |||||    
T  52818668 caccacctccctactactacaaatcacctccaccaccatccccgtcacctccacctccttactattacaa 52818599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 11905266 - 11905342
Alignment:
Q  12 catcatcaccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||| ||||||    
T  11905266 catcaccacaacatccctactattacaaatcacctccaccaccatcgccatcaccaccacctccctactattacaaa 11905342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 11882619 - 11882689
Alignment:
Q  18 caccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    |||| ||||||||||||||||||||||||||||| || |||||||| || |||||||| ||||| ||||||    
T  11882619 caccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaa 11882689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 11891853 - 11891923
Alignment:
Q  18 caccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    |||| ||||||||||||||||||||||||||||| || |||||||| || |||||||| ||||| ||||||    
T  11891853 caccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaa 11891923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 11882336 - 11882401
Alignment:
Q  23 cctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| |||||||||||||| |||||||||||||||||||| || |||||||| ||||| ||||||    
T  11882336 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattacaaa 11882401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 11882432 - 11882497
Alignment:
Q  23 cctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| |||||||||||||| |||||||||||||||||||| || |||||||| ||||| ||||||    
T  11882432 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactattacaaa 11882497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 11891570 - 11891635
Alignment:
Q  23 cctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| |||||||||||||| |||||||||||||||||||| || |||||||| ||||| ||||||    
T  11891570 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattacaaa 11891635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 11891666 - 11891731
Alignment:
Q  23 cctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| |||||||||||||| |||||||||||||||||||| || |||||||| ||||| ||||||    
T  11891666 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactattacaaa 11891731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11882669 - 11882737
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    |||||||| ||||||||||||||||||||||| || |||||||| || |||||||| ||||| ||||||    
T  11882669 ccacctccttactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaa 11882737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889624 - 11889692
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| |||||||| || |||||||| |||||||| |||||||| |||||||| |||||||||||||||    
T  11889624 ccaccaccctactactataaatcacccccaccaccttcaccatctcctccaccaccatactactacaaa 11889692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 11880177 - 11880236
Alignment:
Q  29 tactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    |||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||||    
T  11880177 tactattacaaatctcccccaccaccttcaccatctcctccaccaccatactactacaaa 11880236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 11880273 - 11880332
Alignment:
Q  29 tactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    |||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||||    
T  11880273 tactattacaaatctcccccaccaccttcaccatctcctccaccaccatactactacaaa 11880332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 11902773 - 11902832
Alignment:
Q  29 tactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    |||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||||    
T  11902773 tactattacaaatctcccccaccaccttcaccatctcctccaccaccatactactacaaa 11902832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 11880070 - 11880140
Alignment:
Q  18 caccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||||| || ||||||||||| || ||||| ||||| |||||||| |||||||| |||||||||||||||    
T  11880070 caccaccaccttactattacaagtctcctcccccaccttcaccatctcctccaccaccatactactacaaa 11880140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 11892002 - 11892058
Alignment:
Q  23 cctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatac 79  Q
    |||||| |||| |||||||| |||||||||||||| ||||| |||||||||||||||    
T  11892002 cctcccaactactacaaatcccctccaccaccatcgccatctcctccacctccatac 11892058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 11879793 - 11879852
Alignment:
Q  29 tactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||||||||| || || |||||||| |||||||| |||||||| |||||||||||||||    
T  11879793 tactattacaagtccccaccaccaccttcaccatctcctccaccaccatactactacaaa 11879852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 11902581 - 11902640
Alignment:
Q  29 tactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||    
T  11902581 tactattacaagtctcctccaccaccttcaccatctcctccaccaccatactattacaaa 11902640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 11902677 - 11902736
Alignment:
Q  29 tactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    |||||||||||||| || |||||||| |||||||| |||||||| |||||||| ||||||    
T  11902677 tactattacaaatctcccccaccaccttcaccatctcctccaccaccatactattacaaa 11902736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 52818897 - 52818838
Alignment:
Q  29 tactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||||||| |||| |||||||||||||||||||| || |||||||| || |||||||||    
T  52818897 tactattaccaatcccctccaccaccatcaccatctccaccacctccttattactacaaa 52818838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 52821405 - 52821338
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaa 87  Q
    |||||||| ||||| ||||| |||||||||||||| || || || ||||||||||| |||||||||||    
T  52821405 ccacctccttactactacaagtcacctccaccaccctctccctcacctccacctccttactactacaa 52821338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 11879665 - 11879734
Alignment:
Q  18 caccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaa 87  Q
    ||||||| || ||||||||||| || |||||||||||||| || || |||||||| ||||| ||||||||    
T  11879665 caccaccaccatactattacaagtctcctccaccaccatctccctcacctccaccaccatattactacaa 11879734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 11882816 - 11882877
Alignment:
Q  23 cctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactacta 84  Q
    ||||||||||| |||||||| |||||||||||||| || || ||||||||||| ||| ||||    
T  11882816 cctccctactactacaaatcccctccaccaccatcgccgtctcctccacctccttaccacta 11882877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 11905613 - 11905665
Alignment:
Q  23 cctccctactattacaaatcacctccaccaccatcaccatcgcctccacctcc 75  Q
    ||||||||||| |||||||| ||||||||||| || ||||| |||||||||||    
T  11905613 cctccctactactacaaatcccctccaccaccgtctccatctcctccacctcc 11905665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 52818618 - 52818554
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactacta 84  Q
    |||||||| ||||||||||| ||||||||||| ||||| ||||| || |||||||| || |||||    
T  52818618 ccacctccttactattacaagtcacctccacctccatctccatctccaccacctccttattacta 52818554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 11879619 - 11879686
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaa 87  Q
    |||||||| ||||| |||||||| ||||||||||| ||||| || || ||||| |||||||| |||||    
T  11879619 ccacctccttactactacaaatctcctccaccaccctcaccttccccaccaccaccatactattacaa 11879686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 11879937 - 11879996
Alignment:
Q  29 tactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| |||||||| || ||||| || |||||||| |||||||| |||||||||||||||    
T  11879937 tactactacaaatctcccccacccccttcaccatctcctccaccaccatactactacaaa 11879996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 11889777 - 11889835
Alignment:
Q  29 tactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaa 87  Q
    ||||||||||| || || |||||||| |||||||| |||||||| |||||||| |||||    
T  11889777 tactattacaagtccccaccaccaccttcaccatctcctccaccaccatactattacaa 11889835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 11905176 - 11905246
Alignment:
Q  18 caccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||||| || |||||||| || ||||| || |||||||||||||| ||||| |||||||| || ||||||    
T  11905176 caccaccaccttactattataagtcaccacccccaccatcaccatcccctccccctccatattattacaaa 11905246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11879832 - 11879900
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || ||||| || ||||| || |||||||| |||||||||||||||    
T  11879832 ccaccaccatactactacaaatctcccccacccccttcaccgtctcctccaccaccatactactacaaa 11879900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 11882717 - 11882781
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactacta 84  Q
    |||||||| |||||||||||||| || ||||| ||||| ||||| || |||||||| ||| ||||    
T  11882717 ccacctccttactattacaaatctcccccacctccatctccatctccaccacctccttaccacta 11882781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888232 - 11888300
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888232 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888280 - 11888348
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888280 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888328 - 11888396
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888328 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888376 - 11888444
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888376 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888424 - 11888492
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888424 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888472 - 11888540
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888472 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888520 - 11888588
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888520 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888568 - 11888636
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888568 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888616 - 11888684
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888616 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888664 - 11888732
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888664 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888712 - 11888780
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888712 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888760 - 11888828
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888760 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888808 - 11888876
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888808 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888856 - 11888924
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888856 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888904 - 11888972
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888904 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11888972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11888952 - 11889020
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11888952 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889000 - 11889068
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11889000 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889048 - 11889116
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11889048 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889096 - 11889164
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11889096 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889144 - 11889212
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11889144 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889192 - 11889260
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11889192 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889240 - 11889308
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11889240 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889288 - 11889356
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11889288 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889336 - 11889404
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11889336 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889404  T

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Target: chr1; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889384 - 11889452
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11889384 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889452  T

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Target: chr1; HSP #63
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889432 - 11889500
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11889432 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889500  T

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Target: chr1; HSP #64
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11889480 - 11889548
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaa 88  Q
    ||||| || ||||| |||||||| || || |||||||| || || |||||||| |||||||||||||||    
T  11889480 ccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaa 11889548  T

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Target: chr1; HSP #65
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 52818993 - 52818941
Alignment:
Q  29 tactattacaaatcacctccaccaccatcaccatcgcctccacctccatacta 81  Q
    |||||||| || ||||| || |||||||||||||| ||||| |||||||||||    
T  52818993 tactattataagtcaccacctccaccatcaccatcccctccccctccatacta 52818941  T

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Target: chr1; HSP #66
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 52821357 - 52821293
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactacta 84  Q
    |||||||| ||||| ||||| |||||||||||||| ||||| || ||||| || || ||||||||    
T  52821357 ccacctccttactactacaagtcacctccaccaccttcaccttcacctcctccaccttactacta 52821293  T

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Target: scaffold1918 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 74 - 7
Alignment:
Q  20 ccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaa 87  Q
    ||||| || |||||||||||||| || ||||||||||| || || |||||||||||||||||||||||    
T  74 ccaccaccttactattacaaatctccaccaccaccatctccctcacctccacctccatactactacaa 7  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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