View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13299_high_10 (Length: 358)
Name: NF13299_high_10
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13299_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 147 - 341
Target Start/End: Original strand, 46292269 - 46292463
Alignment:
| Q |
147 |
aggttaaattgaaatatatcaaaccattaagttttcttaacacaagaagtatcgtaaaaagacttggaagaaatagtttaaacaatttcaacgtaatatg |
246 |
Q |
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| T |
46292269 |
aggttaaaatgaaacatatcaaaccatcaagttttcttaacacaagaagtatcgtaaaaagacttggaagaaatagtttaaacaatttcaacgtaaaatg |
46292368 |
T |
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| Q |
247 |
aaataaatcatatgtcccaaaggaacataaaaacaatctaaaaaactgctcccaaataaatgttttaaagtttccttcttgtattggaaaatttt |
341 |
Q |
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| T |
46292369 |
aaataaaccatatgtcccaaaggaacataaaaacaatctaaaaaactgctcccaaataaatgttgtaaagtgtccttcttgtgttggaaaatttt |
46292463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 46292123 - 46292208
Alignment:
| Q |
1 |
aggtgttttgaagtggaatttggtattggtctacttggtcacatgggatgtaactaacaaacagccccgaaatatcttacaaatag |
86 |
Q |
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| T |
46292123 |
aggtgttttgaagtggaatttggtattggtctacttggtcacatgggatgtaactatcaaacagccccgaaatatcttacaaatag |
46292208 |
T |
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