View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13299_high_11 (Length: 309)

Name: NF13299_high_11
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13299_high_11
NF13299_high_11
[»] chr3 (14 HSPs)
chr3 (162-307)||(40131919-40132076)
chr3 (18-145)||(40132105-40132232)
chr3 (170-248)||(548411-548489)
chr3 (163-264)||(19954451-19954551)
chr3 (163-256)||(10256091-10256183)
chr3 (163-264)||(10661756-10661856)
chr3 (178-253)||(10744810-10744885)
chr3 (163-249)||(782838-782923)
chr3 (226-264)||(10511088-10511126)
chr3 (162-200)||(17743104-17743142)
chr3 (162-200)||(19044424-19044462)
chr3 (215-256)||(10180025-10180066)
chr3 (263-307)||(10511137-10511181)
chr3 (263-307)||(10514462-10514506)
[»] chr7 (6 HSPs)
chr7 (162-255)||(25432113-25432206)
chr7 (163-244)||(41832664-41832744)
chr7 (162-201)||(4571662-4571701)
chr7 (162-201)||(8083388-8083427)
chr7 (163-201)||(41830300-41830338)
chr7 (219-264)||(23613705-23613750)
[»] chr4 (3 HSPs)
chr4 (163-264)||(7785277-7785378)
chr4 (162-244)||(2547078-2547159)
chr4 (215-252)||(4174779-4174816)
[»] chr6 (4 HSPs)
chr6 (163-255)||(1136228-1136320)
chr6 (163-303)||(24249710-24249858)
chr6 (163-201)||(30689634-30689672)
chr6 (163-244)||(6825508-6825588)
[»] scaffold0655 (1 HSPs)
scaffold0655 (164-252)||(694-782)
[»] chr2 (4 HSPs)
chr2 (162-264)||(36402683-36402783)
chr2 (170-243)||(24038322-24038394)
chr2 (170-243)||(24039517-24039589)
chr2 (163-201)||(31269463-31269501)
[»] chr8 (2 HSPs)
chr8 (163-200)||(5690859-5690896)
chr8 (170-253)||(3567495-3567577)
[»] chr5 (6 HSPs)
chr5 (162-244)||(21256678-21256759)
chr5 (163-201)||(43233925-43233963)
chr5 (163-200)||(41949333-41949370)
chr5 (163-200)||(41951731-41951768)
chr5 (163-201)||(21254248-21254286)
chr5 (163-201)||(26873161-26873199)
[»] chr1 (3 HSPs)
chr1 (163-201)||(2427331-2427369)
chr1 (171-235)||(25189165-25189229)
chr1 (263-307)||(29850684-29850728)
[»] scaffold0959 (1 HSPs)
scaffold0959 (163-202)||(408-447)
[»] scaffold0023 (1 HSPs)
scaffold0023 (163-202)||(111544-111583)
[»] scaffold0017 (1 HSPs)
scaffold0017 (159-201)||(183070-183112)
[»] scaffold0525 (1 HSPs)
scaffold0525 (169-201)||(2034-2066)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 162 - 307
Target Start/End: Complemental strand, 40132076 - 40131919
Alignment:
Q  162 gtgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaaagtatccca 261  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40132076 gtgttatgaaatatggcatctatggaaggaatgagagaaatagatcaaagttttttgtattgataaaaattgaatattacaaatgagtgaaagtatccca 40131977  T
Q  262 c------------tacaactatatatactactatagaattaatgctgcttgtaactaa 307  Q
    |            ||||||||||||||||||||||| |||||||||||||||||||||    
T  40131976 ctaatagggtgattacaactatatatactactataggattaatgctgcttgtaactaa 40131919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 40132232 - 40132105
Alignment:
Q  18 ggttggtttggcattagttattatactttgttgctatatcttgcctcatgctcaacaattttttgggttatatttgaatggtaaagcattacatgataan 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  40132232 ggttggtttggcattagttattatattttgttgctatatcttgcctcatgctcaacaattttttgggttatatttgaatggtaaagcattacatgatagt 40132133  T
Q  118 nnnnnnnccttgtttggattgctggtgt 145  Q
           |||||||||||||||||||||    
T  40132132 tttttttccttgtttggattgctggtgt 40132105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 548489 - 548411
Alignment:
Q  170 aaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgag 248  Q
    |||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||||    
T  548489 aaacttggcatccatggaaggaatgagagaaatagatcaaagttcttagtattgatggaaaatgaatattacaaatgag 548411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 19954451 - 19954551
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaaagtatcccac 262  Q
    |||||||||||||| ||||||||||||||| |||||||||  | | ||  | |||||||||||| |||| ||||| |||||||||||||||||  |||||    
T  19954451 tgttatgaaacatgacatccatggaaggaaggagagaaatctaac-aatctctttgtattgatggaaatggaataatacaaatgagtgaaagttacccac 19954549  T
Q  263 ta 264  Q
    ||    
T  19954550 ta 19954551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 10256091 - 10256183
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaaagta 256  Q
    ||||| |||||||||||||||||||| ||| ||||||||   | ||||  |||||||||||||| ||||  ||||||||||||||||| |||||    
T  10256091 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaa-ctttttgtattgatggaaatgaaatattacaaatgagtggaagta 10256183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 10661756 - 10661856
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaaagtatcccac 262  Q
    ||||| |||||||| ||||||||||| ||||||||||||   | |||| | ||| ||| |   |||||| ||||||||||||||||||||||||||||||    
T  10661756 tgttaggaaacatgacatccatggaaagaatgagagaaaactaacaaactcttt-gtagtatggaaaatggaatattacaaatgagtgaaagtatcccac 10661854  T
Q  263 ta 264  Q
    ||    
T  10661855 ta 10661856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 10744885 - 10744810
Alignment:
Q  178 catccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaaa 253  Q
    ||||||| |||||||||||||||||  |  |||| | |||||||||||| ||||||||||||| |||| |||||||    
T  10744885 catccatagaaggaatgagagaaatgtagtaaagctctttgtattgatggaaattgaatattataaattagtgaaa 10744810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 782838 - 782923
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagt 249  Q
    ||||| |||||||| ||||||||||||||| |||||||||  | ||||  | |||||||||||  |||| |||||||||||||||||    
T  782838 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaa-ctctttgtattgatagaaatggaatattacaaatgagt 782923  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 10511088 - 10511126
Alignment:
Q  226 gaaaattgaatattacaaatgagtgaaagtatcccacta 264  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10511088 gaaaatggaatattacaaatgagggaaagtatcccacta 10511126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 17743142 - 17743104
Alignment:
Q  162 gtgttatgaaacatggcatccatggaaggaatgagagaa 200  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  17743142 gtgttaggaaacatggcatccatgaaaggaatgagagaa 17743104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 19044462 - 19044424
Alignment:
Q  162 gtgttatgaaacatggcatccatggaaggaatgagagaa 200  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  19044462 gtgttaggaaacatggcatccatgaaaggaatgagagaa 19044424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 10180025 - 10180066
Alignment:
Q  215 tttgtattgatgaaaattgaatattacaaatgagtgaaagta 256  Q
    |||||||||||| ||||  |||||||||||||||||||||||    
T  10180025 tttgtattgatggaaatgaaatattacaaatgagtgaaagta 10180066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 10511137 - 10511181
Alignment:
Q  263 tacaactatatatactactatagaattaatgctgcttgtaactaa 307  Q
    |||||||||||||| |||||||||| |||| || |||||||||||    
T  10511137 tacaactatatatattactatagaactaatactacttgtaactaa 10511181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 10514462 - 10514506
Alignment:
Q  263 tacaactatatatactactatagaattaatgctgcttgtaactaa 307  Q
    ||||||||||||||||||||||||| |||| ||  ||||||||||    
T  10514462 tacaactatatatactactatagaactaatactatttgtaactaa 10514506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 25432206 - 25432113
Alignment:
Q  162 gtgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaaagt 255  Q
    |||||||||||||||||||||||||||||||||||||||||  | ||||||| ||| |||||||| |||||||||||||| |||||||||||||    
T  25432206 gtgttatgaaacatggcatccatggaaggaatgagagaaatgtagcaaagttctttatattgatggaaattgaatattacgaatgagtgaaagt 25432113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 41832744 - 41832664
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaa 244  Q
    ||||| |||||||||||||||||||||||||||||||||   |  |||  | ||| ||||||||||||||||||||||||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaa-ctctttctattgatgaaaattgaatattacaaa 41832664  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 4571701 - 4571662
Alignment:
Q  162 gtgttatgaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  4571701 gtgttatgaaacatgacattcatggaaggaatgagagaaa 4571662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 8083388 - 8083427
Alignment:
Q  162 gtgttatgaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  8083388 gtgttaggaaacatggcatccatggaaggaaggagagaaa 8083427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 41830338 - 41830300
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  41830338 tgttaggaaacatgtcatccatggaaggaatgagagaaa 41830300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 23613750 - 23613705
Alignment:
Q  219 tattgatgaaaattgaatattacaaatgagtgaaagtatcccacta 264  Q
    |||||||| ||||  |||||||||||||||||||||| ||||||||    
T  23613750 tattgatggaaatgaaatattacaaatgagtgaaagtttcccacta 23613705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 7785277 - 7785378
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaaagtatcccac 262  Q
    |||| ||||||||  |||||||||||||||||| |||||||  |||||| | |||||||||||| ||||||||||||||||||||||||||||  |||||    
T  7785277 tgttgtgaaacattacatccatggaaggaatgaaagaaatatgtcaaagctctttgtattgatggaaattgaatattacaaatgagtgaaagttacccac 7785376  T
Q  263 ta 264  Q
    ||    
T  7785377 ta 7785378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 2547159 - 2547078
Alignment:
Q  162 gtgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaa 244  Q
    |||||| |||||||| ||||||||||||||| |||||||||  | ||||  | |||||||||||  |||| ||||||||||||    
T  2547159 gtgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaa-ctctttgtattgatagaaatggaatattacaaa 2547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 4174779 - 4174816
Alignment:
Q  215 tttgtattgatgaaaattgaatattacaaatgagtgaa 252  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  4174779 tttgtattaatgaaaatagaatattacaaatgagtgaa 4174816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 1136228 - 1136320
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaaagt 255  Q
    |||||| ||||||| |||||||||||||||||||||||||| | ||||  | ||| |||||||| ||||||||||||||||||||||||||||    
T  1136228 tgttatcaaacatgacatccatggaaggaatgagagaaatatagcaaatctctttatattgatggaaattgaatattacaaatgagtgaaagt 1136320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 303
Target Start/End: Complemental strand, 24249858 - 24249710
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaaa-gtatccca 261  Q
    ||||| ||||||||||||| ||| || ||||||||||||   | |||| | ||| ||||| ||| |||| ||||||||||||||||||||| ||| ||||    
T  24249858 tgttaggaaacatggcatcaatgtaaagaatgagagaaaactaacaaactcttt-gtattaatggaaatggaatattacaaatgagtgaaaagtacccca 24249760  T
Q  262 cta--------caactatatatactactatagaattaatgctgcttgtaa 303  Q
     ||        ||||||||||||||||||||| | ||||||| |||||||    
T  24249759 ttaggtagttacaactatatatactactataggactaatgctacttgtaa 24249710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 30689634 - 30689672
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  30689634 tgttaggaaacatggcatccatgaaaggaatgagagaaa 30689672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 6825508 - 6825588
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaa 244  Q
    ||||| |||||||||||||||||||||||| |||| ||||  | ||||  | |||||||||||  |||| ||||||||||||    
T  6825508 tgttaggaaacatggcatccatggaaggaaggagataaatctaacaaa-ctctttgtattgatagaaatggaatattacaaa 6825588  T

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Target: scaffold0655 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 782 - 694
Alignment:
Q  164 gttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaa 252  Q
    |||| |||||||||||||| | ||||||||||||||||   |  |||| | |||||||||||| ||||||||||||| |||||||||||    
T  782 gttaggaaacatggcatccgtcgaaggaatgagagaaaagtagtaaagctctttgtattgatggaaattgaatattaaaaatgagtgaa 694  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 36402683 - 36402783
Alignment:
Q  162 gtgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaaagtatccca 261  Q
    |||||||||||||||  |||||||||| ||| |||||||||  | |||| | ||| ||||||||| |||| |||||||||||||||||||||||  ||||    
T  36402683 gtgttatgaaacatgatatccatggaatgaaggagagaaatcta-caaactcttt-gtattgatggaaatagaatattacaaatgagtgaaagttaccca 36402780  T
Q  262 cta 264  Q
    |||    
T  36402781 cta 36402783  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 24038394 - 24038322
Alignment:
Q  170 aaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaa 243  Q
    ||||||||||||||||||||||||||||||||   |  |||  ||||| ||||||||||||| |||||||||||    
T  24038394 aaacatggcatccatggaaggaatgagagaaaactaagaaa-ctttttctattgatgaaaatggaatattacaa 24038322  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 24039589 - 24039517
Alignment:
Q  170 aaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaa 243  Q
    ||||||||||||||||||||||||||||||||   |  |||  ||||| ||||||||||||| |||||||||||    
T  24039589 aaacatggcatccatggaaggaatgagagaaaactaagaaa-ctttttctattgatgaaaatggaatattacaa 24039517  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 31269463 - 31269501
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  31269463 tgttaggaaacatggcatccatggaaggaaggagagaaa 31269501  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 5690896 - 5690859
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5690896 tgttatgaaacatggcatccatggaaggaatgagagaa 5690859  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 3567495 - 3567577
Alignment:
Q  170 aaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaatgagtgaaa 253  Q
    ||||||| ||||| ||||||||| || ||||||  | |||| | ||| |||||||||||||| |||||||||||||||||||||    
T  3567495 aaacatgacatccgtggaaggaaggaaagaaatctaacaaactcttt-gtattgatgaaaatggaatattacaaatgagtgaaa 3567577  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 21256759 - 21256678
Alignment:
Q  162 gtgttatgaaacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaatattacaaa 244  Q
    |||||| |||||||||||||||||||||||| ||||||||   | ||||  | ||| ||||||||||||| ||||||||||||    
T  21256759 gtgttaggaaacatggcatccatggaaggaaggagagaaaactaacaaa-ctctttctattgatgaaaatggaatattacaaa 21256678  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 43233963 - 43233925
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  43233963 tgttaggaaacatggcatccatggaaggaatgagagaaa 43233925  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 41949333 - 41949370
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaa 200  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  41949333 tgttaggaaacatggcatccatggaaggaatgagagaa 41949370  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 41951731 - 41951768
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaa 200  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  41951731 tgttaggaaacatggcatccatggaaggaatgagagaa 41951768  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 21254286 - 21254248
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaaa 21254248  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 26873161 - 26873199
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  26873161 tgttaggaaacatggcatccatggaaggaaggagagaaa 26873199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 2427369 - 2427331
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaa 201  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  2427369 tgttaggaaacatggcatccatggaaggaatgagagaaa 2427331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 25189229 - 25189165
Alignment:
Q  171 aacatggcatccatggaaggaatgagagaaatagatcaaagttttttgtattgatgaaaattgaa 235  Q
    |||||||||||| ||||||||||||||||||   |  ||||||| ||||||||||| ||||||||    
T  25189229 aacatggcatccgtggaaggaatgagagaaaagtagtaaagtttattgtattgatggaaattgaa 25189165  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 29850684 - 29850728
Alignment:
Q  263 tacaactatatatactactatagaattaatgctgcttgtaactaa 307  Q
    |||||||||||||||||||||| ||||||| || |||||||||||    
T  29850684 tacaactatatatactactataaaattaatactacttgtaactaa 29850728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 408 - 447
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaat 202  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  408 tgttaggaaacaaggcatccatggaaggaatgagagaaat 447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 111544 - 111583
Alignment:
Q  163 tgttatgaaacatggcatccatggaaggaatgagagaaat 202  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  111544 tgttaggaaacatggcatccatggaaggaaggagagaaat 111583  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 183112 - 183070
Alignment:
Q  159 atggtgttatgaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||||| |||||||||||||||||| ||| |||||||||||    
T  183112 atggtgttgtgaaacatggcatccatgaaagaaatgagagaaa 183070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 2034 - 2066
Alignment:
Q  169 gaaacatggcatccatggaaggaatgagagaaa 201  Q
    |||||||||||||||||||||||| ||||||||    
T  2034 gaaacatggcatccatggaaggaaggagagaaa 2066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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