View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13299_high_16 (Length: 242)
Name: NF13299_high_16
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13299_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 43669454 - 43669544
Alignment:
| Q |
1 |
ttaacacagaagttgttcaaggcggaaagtactttcgtagattagatatattatataaatttatcaatatacgtggagaccagtcgagggg |
91 |
Q |
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| T |
43669454 |
ttaacacagaagttgttcaacgcggaaagtactttcgtagattagatatattatataaatttatcaatatacgtggagaccagtcgagggg |
43669544 |
T |
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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 43669602 - 43669679
Alignment:
| Q |
149 |
aaatatgaccatagtcggttagtaattgatatccgcaagaatatttgatacattgaggttttgctttgaagctataat |
226 |
Q |
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| T |
43669602 |
aaatatgaccatagtcggttagtaattgatatccgcaagaatatttgatacattgaggttttgctttgaagctataat |
43669679 |
T |
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