View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13299_high_5 (Length: 591)

Name: NF13299_high_5
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13299_high_5
NF13299_high_5
[»] chr5 (7 HSPs)
chr5 (254-572)||(36192268-36192588)
chr5 (103-219)||(34732302-34732418)
chr5 (103-259)||(32487132-32487288)
chr5 (500-572)||(11135927-11135999)
chr5 (103-259)||(2866797-2866955)
chr5 (6-65)||(36192883-36192942)
chr5 (18-69)||(16948337-16948388)
[»] chr4 (5 HSPs)
chr4 (254-571)||(7281452-7281774)
chr4 (103-179)||(22228424-22228500)
chr4 (103-259)||(55406506-55406662)
chr4 (18-69)||(56193650-56193701)
chr4 (254-302)||(53722836-53722882)
[»] chr3 (5 HSPs)
chr3 (103-256)||(1539622-1539774)
chr3 (103-259)||(2455819-2455975)
chr3 (105-152)||(50763234-50763281)
chr3 (22-69)||(23624894-23624941)
chr3 (160-256)||(50761123-50761219)
[»] chr2 (3 HSPs)
chr2 (103-256)||(38120845-38120998)
chr2 (103-259)||(40934686-40934844)
chr2 (18-65)||(44285372-44285419)
[»] chr8 (3 HSPs)
chr8 (104-179)||(12568105-12568180)
chr8 (103-259)||(38545598-38545754)
chr8 (103-177)||(30773557-30773635)
[»] scaffold0343 (1 HSPs)
scaffold0343 (103-259)||(8244-8399)
[»] chr6 (2 HSPs)
chr6 (19-69)||(27739239-27739289)
chr6 (18-59)||(6086921-6086962)
[»] chr1 (1 HSPs)
chr1 (30-69)||(34501172-34501211)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 254 - 572
Target Start/End: Complemental strand, 36192588 - 36192268
Alignment:
Q  254 aattgattcatatcatatttttctccttttattctttgttgatgaaattcataactacccaaaatgaaattaaattcatctgtaccattttaccacttct 353  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36192588 aattgtttcatatcatatttttctccttttattctttgttgatgaaattcataactacccaaaatgaaattaaattcatctgtaccattttaccacttct 36192489  T
Q  354 atctcttaaaactaacacttccattttctactatgaacttggtgtggttttgtggatgaaattcgaactactcaaaagaagaagnnnnnnnttgatggaa 453  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  36192488 atctcttaaaacttacacttccattttctactatgaacttggtgtggttttgtggatgaaattcgaactactcaaaagaagaagaaaaaaattgatggaa 36192389  T
Q  454 aaacaaattaagatattgatactataacaagtggtggtgagagcccgaaagatgatgacggttgaaagatagacagaagga--agagagagaaccaatag 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||    
T  36192388 aaacaaattaagatattgatactataacaagtggtggtgagagcccgaaagatgatgacggttgaaagatagacagaaggaagagagagagagccaatag 36192289  T
Q  552 gtgagacttgagagcaggttg 572  Q
    |||||||||||||||||||||    
T  36192288 gtgagacttgagagcaggttg 36192268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 34732302 - 34732418
Alignment:
Q  103 gccaaatatttttagaatatatataaatccgttttaagttattaacaaaattatgaattagcctagtggtttatttttcagaaactaatgtagagaatgg 202  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||   |||||||  |    
T  34732302 gccaaatgtttttagaatatatataaatccgttttaagatattaacaaaattatgaattagcctagtggtttatttttctaaaactaccatagagaacag 34732401  T
Q  203 tggttcaattcccattg 219  Q
    |||||||||||| ||||    
T  34732402 tggttcaattcctattg 34732418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 103 - 259
Target Start/End: Complemental strand, 32487288 - 32487132
Alignment:
Q  103 gccaaatatttttagaatatatataaatccgttttaagttattaacaaaattatgaattagcctagtggtttatttttcagaaactaatgtagagaatgg 202  Q
    ||||||||||||||||||||||||| ||| |||||||  ||||||  |||| ||||||||||||||||||||||||| | | ||| | | ||| ||| ||    
T  32487288 gccaaatatttttagaatatatatatatcagttttaaaatattaatgaaataatgaattagcctagtggtttattttcctggaacaactatagggaacgg 32487189  T
Q  203 tggttcaattcccattgcgatctcnnnnnnngagtaaagtattaataatacaattga 259  Q
    |||||| |||||||||  || |||       ||||||||||||||||||||||||||    
T  32487188 tggttcgattcccattaggacctctttttttgagtaaagtattaataatacaattga 32487132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 500 - 572
Target Start/End: Complemental strand, 11135999 - 11135927
Alignment:
Q  500 gaaagatgatgacggttgaaagatagacagaaggaagagagagaaccaataggtgagacttgagagcaggttg 572  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  11135999 gaaagatgatgactgttaaaagatagacagaaggaaaagagagaaccaaaaggtgagacttgagagcaggttg 11135927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 2866797 - 2866955
Alignment:
Q  103 gccaaatatttttagaatatatataaat--ccgttttaagttattaacaaaattatgaattagcctagtggtttatttttcagaaactaatgtagagaat 200  Q
    ||||||||||||||||||||||||| ||  | |||||||  |||||   |||| ||||||||||||||||||||||||| | ||||| | | ||| |||     
T  2866797 gccaaatatttttagaatatatatatatatcagttttaaaatattagtgaaataatgaattagcctagtggtttattttcctgaaacaactatagggaac 2866896  T
Q  201 ggtggttcaattcccattgcgatctcnnnnnnngagtaaagtattaataatacaattga 259  Q
    |||||||| |||||||||  || |||       ||||||||||||||||||||||||||    
T  2866897 ggtggttcgattcccattaggacctctttttttgagtaaagtattaataatacaattga 2866955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 36192942 - 36192883
Alignment:
Q  6 agcagcacagacgtaacatttgataaattatggataatacgataattataggtaacttgg 65  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36192942 agcaacacggacgtaacattcgataaattatggataatacgataattataggtaacttgg 36192883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 16948337 - 16948388
Alignment:
Q  18 gtaacatttgataaattatggataatacgataattataggtaacttgggggc 69  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||| ||||    
T  16948337 gtaacatatgataaattatggataatatgataattataggtaacttgagggc 16948388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 254 - 571
Target Start/End: Complemental strand, 7281774 - 7281452
Alignment:
Q  254 aattgattcatatcatatttttctccttttattctttgttgatgaaattcataactacccaaaatgaaattaaattcatctgtaccattttaccacttct 353  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  7281774 aattgattcatataatatttttctccttttattctttgttgatgaaagtcataactccccaaaatgaaattaaattcatctgttccattttaccacttct 7281675  T
Q  354 atctcttaaaactaacacttccattttctactatgaacttggtgtggttttgtggatgaaattcgaactactcaaaagaagaagnnnnnnnttgatggaa 453  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||       |||||||||    
T  7281674 atctcttaaaacttacacttccattttctactatgaacttgttgtggttttgtggatgaaattcgaactactcgaaagaagaagaaaaaaattgatggaa 7281575  T
Q  454 aaacaaattaagatattgatactataacaagtg-------gtggtgagagcccgaaagatgatgacggttgaaagatagacagaaggaagagagagaacc 546  Q
    |||||||||||  |||||||| |||||||||||       |||||||||||| ||||||||||||||||| ||||||||||| |||||  ||||||||||    
T  7281574 aaacaaattaaagtattgataatataacaagtggtggcgagtggtgagagcctgaaagatgatgacggttaaaagatagacaaaagga--agagagaacc 7281477  T
Q  547 aataggtgagacttgagagcaggtt 571  Q
    || ||||||||||||||||||||||    
T  7281476 aaaaggtgagacttgagagcaggtt 7281452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 22228500 - 22228424
Alignment:
Q  103 gccaaatatttttagaatatatataaatccgttttaagttattaacaaaattatgaattagcctagtggtttatttt 179  Q
    |||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  22228500 gccaaatattattagaatatatataaatccgttttaagatattaataaaattatgaattagcctagtggtttatttt 22228424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 55406506 - 55406662
Alignment:
Q  103 gccaaatatttttagaatatatataaatccgttttaagttattaacaaaattatgaattagcctagtggtttatttttcagaaactaatgtagagaatgg 202  Q
    ||||||||||||||||||||||||| ||| |||||||  ||||||  |||| ||||||||||||||||||||||||| | | ||| | | ||| ||| ||    
T  55406506 gccaaatatttttagaatatatatatatcagttttaaaatattaatgaaataatgaattagcctagtggtttattttcctggaacaactatagggaacgg 55406605  T
Q  203 tggttcaattcccattgcgatctcnnnnnnngagtaaagtattaataatacaattga 259  Q
    |||||| |||||||||  || |||       ||||||||||||||||||||||||||    
T  55406606 tggttcgattcccattaggacctcttcttttgagtaaagtattaataatacaattga 55406662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 56193701 - 56193650
Alignment:
Q  18 gtaacatttgataaattatggataatacgataattataggtaacttgggggc 69  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  56193701 gtaacatttgataaattatggataatatgataattataggtaaattgggggc 56193650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 53722836 - 53722882
Alignment:
Q  254 aattgattcatatcatatttttctccttttattctttgttgatgaaatt 302  Q
    ||||||| |||||||| ||||||||||||  ||||||||||||||||||    
T  53722836 aattgatccatatcatgtttttctccttt--ttctttgttgatgaaatt 53722882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 1539774 - 1539622
Alignment:
Q  103 gccaaatatttttagaatatatataaatccgttttaagttattaacaaaattatgaattagcctagtggtttatttttcagaaactaatgtagagaatgg 202  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||   |||||||| |    
T  1539774 gccaaatatgtttagaatatatataaatccgttttaagttattgacaaaattatgaattagcctagtggtttattttcctgaaactaccatagagaat-g 1539676  T
Q  203 tggttcaattcccattgcgatctcnnnnnnngagtaaagtattaataatacaat 256  Q
    |||||||||||||||||  | |||       |||||||||||||||||||||||    
T  1539675 tggttcaattcccattggaacctctttttttgagtaaagtattaataatacaat 1539622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 103 - 259
Target Start/End: Complemental strand, 2455975 - 2455819
Alignment:
Q  103 gccaaatatttttagaatatatataaatccgttttaagttattaacaaaattatgaattagcctagtggtttatttttcagaaactaatgtagagaatgg 202  Q
    ||||||||||||||||||||||||| ||| |||||||  ||||||  |||| ||||||||||||||||||||||||| | | ||| | | ||| ||| ||    
T  2455975 gccaaatatttttagaatatatatatatcagttttaaaatattaatgaaataatgaattagcctagtggtttattttcctggaacaactatagggaacgg 2455876  T
Q  203 tggttcaattcccattgcgatctcnnnnnnngagtaaagtattaataatacaattga 259  Q
    ||||||||||||||||  || |||       ||||||||||||||||||||||||||    
T  2455875 tggttcaattcccattaggacctctttttttgagtaaagtattaataatacaattga 2455819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 50763281 - 50763234
Alignment:
Q  105 caaatatttttagaatatatataaatccgttttaagttattaacaaaa 152  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  50763281 caaatatgtttagaatatatataaatccgttttaagttattaataaaa 50763234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 23624894 - 23624941
Alignment:
Q  22 catttgataaattatggataatacgataattataggtaacttgggggc 69  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||||    
T  23624894 catttgataaattatggataatatgatagttataggtaatttgggggc 23624941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 50761219 - 50761123
Alignment:
Q  160 ttagcctagtggtttatttttcagaaactaatgtagagaatggtggttcaattcccattgcgatctcnnnnnnngagtaaagtattaataatacaat 256  Q
    |||| ||||||||||||||| | |||||||   |||||||  |||||||||||||||||| || |||       |||||||||||||||||||||||    
T  50761219 ttagtctagtggtttattttcctgaaactaccatagagaacagtggttcaattcccattgggacctctttttttgagtaaagtattaataatacaat 50761123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 38120998 - 38120845
Alignment:
Q  103 gccaaatatttttagaatatatataaatccgttttaagttattaacaaaattatgaattagcctagtggtttatttttcagaaactaatgtagagaatgg 202  Q
    ||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | | |||||   ||||||| ||    
T  38120998 gccaattatttttaaaatatatataaatctgttttaagatattaacaaaattatgaattagcctagtggtttattttcctggaactaccatagagaacgg 38120899  T
Q  203 tggttcaattcccattgcgatctcnnnnnnngagtaaagtattaataatacaat 256  Q
    |||||||| |||||||| || |||        ||||||||||||||||||||||    
T  38120898 tggttcaaatcccattgggacctctttgttttagtaaagtattaataatacaat 38120845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 40934686 - 40934844
Alignment:
Q  103 gccaaatatttttagaatatatataaat--ccgttttaagttattaacaaaattatgaattagcctagtggtttatttttcagaaactaatgtagagaat 200  Q
    ||||||||||||||||||||||||| ||  | |||||||  ||||||  |||| ||||||||||||||||||||||||| |   ||| | | ||| |||     
T  40934686 gccaaatatttttagaatatatatatatatcagttttaaaatattaatgaaataatgaattagcctagtggtttattttcctagaacaactatagggaac 40934785  T
Q  201 ggtggttcaattcccattgcgatctcnnnnnnngagtaaagtattaataatacaattga 259  Q
    |||||||| ||||||| |  || |||       ||||||||||||||||||||||||||    
T  40934786 ggtggttcgattcccagtaagacctctttttttgagtaaagtattaataatacaattga 40934844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 44285419 - 44285372
Alignment:
Q  18 gtaacatttgataaattatggataatacgataattataggtaacttgg 65  Q
    ||||| ||||| |||||||||| |||| ||||||||||||||||||||    
T  44285419 gtaacttttgacaaattatggacaatatgataattataggtaacttgg 44285372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 12568105 - 12568180
Alignment:
Q  104 ccaaatatttttagaatatatataaatccgttttaagttattaacaaaattatgaattagcctagtggtttatttt 179  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||    
T  12568105 ccaaatatttttagaatatatataaatccgttttaagatattaacgaaattatgaattagcttagtagtttatttt 12568180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 38545598 - 38545754
Alignment:
Q  103 gccaaatatttttagaatatatataaatccgttttaagttattaacaaaattatgaattagcctagtggtttatttttcagaaactaatgtagagaatgg 202  Q
    ||||||||||||||||||||||||| ||| |||||||  ||||||  |||| |||||||||| |||||||||||||| | | ||| | | ||| ||| ||    
T  38545598 gccaaatatttttagaatatatatatatcagttttaaaatattaatgaaataatgaattagcgtagtggtttattttcctggaacaactatagggaacgg 38545697  T
Q  203 tggttcaattcccattgcgatctcnnnnnnngagtaaagtattaataatacaattga 259  Q
    |||||  |||||||||  || |||        |||||||||||||||||||||||||    
T  38545698 tggtttgattcccattaggacctcttttttttagtaaagtattaataatacaattga 38545754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 30773635 - 30773557
Alignment:
Q  103 gccaaatatttttagaatatatataaatccgttttaagtt----attaacaaaattatgaattagcctagtggtttatt 177  Q
    ||||||||||||||||||||||||||||| |||||||| |    || |||||||||||||||||| ||| || ||||||    
T  30773635 gccaaatatttttagaatatatataaatctgttttaagattgatataaacaaaattatgaattagtctaatgatttatt 30773557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 8244 - 8399
Alignment:
Q  103 gccaaatatttttagaatatatataaatccgttttaagttattaacaaaattatgaattagcctagtggtttatttttcagaaactaatgtagagaatgg 202  Q
    ||||||||||||| ||||||||||| ||| |||||||  ||||||  |||| ||||||||||||||||||||||||| | | ||| | | ||| ||| ||    
T  8244 gccaaatattttttgaatatatatatatcagttttaaaatattaatgaaataatgaattagcctagtggtttattttcctggaacaactatagggaa-gg 8342  T
Q  203 tggttcaattcccattgcgatctcnnnnnnngagtaaagtattaataatacaattga 259  Q
    |||||  |||||||||  || |||       ||||||||||||||||||||||||||    
T  8343 tggtttgattcccattaggacctctttttttgagtaaagtattaataatacaattga 8399  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 27739239 - 27739289
Alignment:
Q  19 taacatttgataaattatggataatacgataattataggtaacttgggggc 69  Q
    |||||| ||||||| ||||||||||| ||||||||||||||| ||||||||    
T  27739239 taacatatgataaagtatggataatatgataattataggtaatttgggggc 27739289  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 6086962 - 6086921
Alignment:
Q  18 gtaacatttgataaattatggataatacgataattataggta 59  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||    
T  6086962 gtaacatatgatatattatggataatatgataattataggta 6086921  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 34501211 - 34501172
Alignment:
Q  30 aaattatggataatacgataattataggtaacttgggggc 69  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  34501211 aaattacggataatatgataattataggtaacttgggggc 34501172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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