View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13299_high_9 (Length: 405)
Name: NF13299_high_9
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13299_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 52 - 398
Target Start/End: Complemental strand, 533309 - 532963
Alignment:
| Q |
52 |
gcatatagattctttttcctttttctaggaaactttggaatataaatatctatgctgacagcaacaatcaaaatatgaaaagactgaaaaggaactctct |
151 |
Q |
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| T |
533309 |
gcatatagattctttttcctttttctaggaaactttggaatataaatatctatgctgacagcaacaatcaaaatatgaaaagactgaaaaggaactctct |
533210 |
T |
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| Q |
152 |
caaatcttcggaacaaggattgctttcttccacaaaatcaacaacggctgctgcaccaaacttctatttacccgacgagtgttgggaatctgtcttcaaa |
251 |
Q |
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| T |
533209 |
caaatcttcggaacaaggattgctttcttccacaaaatcaacaacggctgctgcaccaaacttctatttacccgacgagtgttgggaatctgtcttcaaa |
533110 |
T |
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| Q |
252 |
ttcgtcatcgacaaggacaacacaacagggagtccaaccgtagctactttccatcgccaatctacattagcttcaaatgtctctccaaggtctccaagca |
351 |
Q |
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| T |
533109 |
ttcgtcatcgacaaggacaacacaacagggagtccaaccgtagctactttccatcgccaatctacattagcttcaaatgtctctccaaggtctccaagca |
533010 |
T |
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| Q |
352 |
attcctttccatcaccaatcttcttctattatctttcacggtctgtg |
398 |
Q |
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| T |
533009 |
attcctttccatcaccaatcttcttctattatctttcacggtctgtg |
532963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 1523979 - 1524041
Alignment:
| Q |
198 |
gctgctgcaccaaacttctatttacccgacgagtgttgggaatctgtcttcaaattcgtcatc |
260 |
Q |
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| T |
1523979 |
gctgctgcagcaaaattttacttacctgatgactgttgggaatctgtcttcaaattcgtcatc |
1524041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 1547373 - 1547417
Alignment:
| Q |
216 |
tatttacccgacgagtgttgggaatctgtcttcaaattcgtcatc |
260 |
Q |
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| T |
1547373 |
tatttacctgacgagtgttgggaatctatcttcaaattcatcatc |
1547417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 1546236 - 1546200
Alignment:
| Q |
224 |
cgacgagtgttgggaatctgtcttcaaattcgtcatc |
260 |
Q |
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| T |
1546236 |
cgacgagtgttgggaatttgtcttcaaattcctcatc |
1546200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 2460661 - 2460613
Alignment:
| Q |
323 |
ttcaaatgtctctccaaggtctccaagcaattcctttccatcaccaatc |
371 |
Q |
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| T |
2460661 |
ttcaaatctctctccatggtctccaaacagttcctctccatcaccaatc |
2460613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 41886293 - 41886334
Alignment:
| Q |
213 |
ttctatttacccgacgagtgttgggaatctgtcttcaaattc |
254 |
Q |
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| T |
41886293 |
ttctatttacctgatgagtgttgggaatgtgtcttcaaattc |
41886334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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