View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13299_low_18 (Length: 233)
Name: NF13299_low_18
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13299_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 45483250 - 45483080
Alignment:
| Q |
1 |
tcgttgagttgagatcaggtggtttagattttaatacagattttgattttaagaaaatagaaatgtcgaaattgaaatatgaattgtccgatctcgatcc |
100 |
Q |
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| T |
45483250 |
tcgttgagttgagatcaggtggtttagattttaatacagattttgattttaagaaaatagaaatgtcgaaattgaaatatgaattgtccgatctcgatcc |
45483151 |
T |
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| Q |
101 |
aacactactaacatgttgactgcgtgatcacatccaaatccaagaagagtagcgtgtaatgtatcagatat |
171 |
Q |
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| T |
45483150 |
aacactactaacatgctgactgcgtgatcacattcaaatccaagaagagtagcgtataatgtatcagatat |
45483080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 45483059 - 45483007
Alignment:
| Q |
172 |
taacacaattgctattccagct----gttagataggtttgacaaaagtataat |
220 |
Q |
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| T |
45483059 |
taacacagttgctattccagctagctgttagataggtttgacaaaagtataat |
45483007 |
T |
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