View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13299_low_2 (Length: 811)
Name: NF13299_low_2
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13299_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 358 - 801
Target Start/End: Complemental strand, 30243739 - 30243311
Alignment:
| Q |
358 |
ctagaaaacacacttacatatctaaaagtccggaaacttgataaatgtgatattttacaacttcaataccactagtcttacgcctagtattagttttcca |
457 |
Q |
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| T |
30243739 |
ctagaaaacacacttatatatctaaaagtccggaaacttgataaatgtgatattttacaacttcaataccactagtcttacgcctagtattagttttcca |
30243640 |
T |
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| Q |
458 |
tattatgatatttaatgtgactttgataccatgttaaatgaacttgaatctatcttaaaaactagtttaaatgatgacaaaatacatatatacatctaac |
557 |
Q |
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| T |
30243639 |
tattgtgatatttaatgtgactttgataccatgttaaatgaacttgaatctatcttaaaaactagtttaaatgatgacaaaatacatatatacatctaac |
30243540 |
T |
|
| Q |
558 |
aactgatgaatagtaattaacctggaattgtaatacaacttcaatatatagttggaagattgatgagtgtaaccttggatcccttgtcatggtgtgtact |
657 |
Q |
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| T |
30243539 |
aactgatgaatagtaattaacctggaattgta---------------atagttggaagattgatgagtgtaaccttggatcccttgtcatggtgtgtact |
30243455 |
T |
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| Q |
658 |
actcggaggtgtacatgcgtagtagagaaccctgttgaagtgtcctggtgggaatattaaattggtgtccccctatgggttttgtgtagttgcattgttt |
757 |
Q |
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| T |
30243454 |
actcggaggtgtacatgcgtagtagagaaccctgttgaagtgtcctggtgggaatattaaattggtgtccccctatgggttttgtgtaattgcattgttt |
30243355 |
T |
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| Q |
758 |
tgaccacgaaaatgcattgctgcccacctcatattagccctttg |
801 |
Q |
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| T |
30243354 |
tgaccacgaaaatgcattgctggccacctcatattagccctttg |
30243311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 30244285 - 30244019
Alignment:
| Q |
16 |
gtaacaataccttattttcatatacttcaaaaaggttaaatggcattaattttaagaaaattgtttgtgccgtgatcctactggcatgcatgcagtgctc |
115 |
Q |
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| T |
30244285 |
gtaacaataccttattttcatatacttcaaaaaggttaaatggcattaattttaagaaaaatgcttgtgccatgatcctactggcatgcatgcagtgctc |
30244186 |
T |
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| Q |
116 |
gccaggtgatgtcgttatcttttacaattaattccgtttgatccaaactaccaactttaatatcgaatgacttttcttatggtgtagacatcattcatat |
215 |
Q |
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| T |
30244185 |
gccaggtgatgtcgttatcttttacaattaattccgtttgatctaaactaccaactttaatatcgaatgacttttcttatggtgtagacatcatccatat |
30244086 |
T |
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| Q |
216 |
cgtattattaattgattattatcacctacttcaaaacttagctactgaaccacacaccgacactact |
282 |
Q |
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| T |
30244085 |
cgtattattaattgattattatcacctacttcaaaacttagctactgaaccacacaccgacactact |
30244019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 30243990 - 30243927
Alignment:
| Q |
278 |
ctacttcagaataatggattggctttcttcccagtttgattaccattaattatacgggacacat |
341 |
Q |
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| T |
30243990 |
ctacttcagaataatggattggatttcttcccagtttgattaccattaattatacgggacacat |
30243927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 30248498 - 30248331
Alignment:
| Q |
90 |
atcctactggcatgcatgcagtgctcgccaggtgatgtcgttatcttt-tacaattaattccgtttgatccaaacta-ccaactttaatatcgaatgact |
187 |
Q |
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| T |
30248498 |
atcctactggcatgcatgcagagctcgctagatgaagtcgttatctttctacaatctatt----ttgatccaaaccaaccaattttaatatggaaggact |
30248403 |
T |
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| Q |
188 |
tttcttatggtgtagacatcat--------tcatatcgtattattaattgattattatcacctacttcaaaa |
251 |
Q |
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| T |
30248402 |
tttcttatggtgtagacatcatcatctataccatatcgtatgatcaattaattattaccacctacttcaaaa |
30248331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 476 - 517
Target Start/End: Complemental strand, 582326 - 582284
Alignment:
| Q |
476 |
gactttgataccatgttaaatgaacttgaatct-atcttaaaa |
517 |
Q |
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| T |
582326 |
gactctgataccatgttaaatgaacttgaatctcatcttaaaa |
582284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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