View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13299_low_3 (Length: 679)

Name: NF13299_low_3
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13299_low_3
NF13299_low_3
[»] chr1 (2 HSPs)
chr1 (18-570)||(43095457-43096009)
chr1 (630-675)||(43095352-43095397)
[»] chr3 (8 HSPs)
chr3 (304-515)||(44188359-44188570)
chr3 (18-185)||(44187794-44187960)
chr3 (304-515)||(6094520-6094714)
chr3 (630-675)||(44162638-44162683)
chr3 (630-675)||(44188758-44188803)
chr3 (630-675)||(6094904-6094949)
chr3 (230-296)||(44188009-44188074)
chr3 (218-274)||(34003608-34003664)
[»] chr2 (5 HSPs)
chr2 (304-515)||(32727486-32727697)
chr2 (19-190)||(32726923-32727093)
chr2 (630-675)||(32727886-32727931)
chr2 (630-675)||(32718902-32718947)
chr2 (230-296)||(32727136-32727201)
[»] chr8 (1 HSPs)
chr8 (238-279)||(13897976-13898017)


Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Complemental strand, 43096009 - 43095457
Alignment:
Q  18 caagccaattccatccccaatggggattgtttggatccataattgtggcatctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43096009 caagccaattccatccccaatggggattgtttggatccataattgtggcatctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagt 43095910  T
Q  118 tatatgttattatccatataaaactatttcatgtttgcttatcataaatcttataggaataaattatatgtattgtaagtgtaatcataactcgccattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43095909 tatatgttattatccatataaaactatttcatgtttgcttatcataaatcttaaaggaataaattatatgtattgtaagtgtaatcataactcgccattt 43095810  T
Q  218 acataattgtttttagttaaaaaactgtaaagtacgatgtagcaaattgaagagttgtgattaaatgttagtgtaaaattataacttttctcatttgtat 317  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43095809 acataattgtttttagttaaaaaaccgtaaagtacgatgtagcaaattgaagagttgtgattaaatgttagtgtaaaattataacttttctcatttgtat 43095710  T
Q  318 tgaaattcagcattactaaaatactataaaaagaggtatgttagtacctgatgtgttgatgcataagccaaagccttttctcttctcatagcagcaattt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43095709 tgaaattcagcattactaaaatactataaaaagaggtatgttagtacctgatgtgttgatgcataagccaaagccttttctcttctcatagcagcaattt 43095610  T
Q  418 gtctattcaacaatcttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggccactttagtacaga 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43095609 gtctattcaacaatcttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggccactttagtgcaga 43095510  T
Q  518 ttttgtttaagaaaacaaaatcaaagcatataaatgtattgattggactgaac 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43095509 ttttgtttaagaaaacaaaatcaaagcatataaatgtattgattggactgaac 43095457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 630 - 675
Target Start/End: Complemental strand, 43095397 - 43095352
Alignment:
Q  630 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttc 675  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  43095397 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttc 43095352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 9e-78; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 304 - 515
Target Start/End: Original strand, 44188359 - 44188570
Alignment:
Q  304 tttctcatttgtattgaaattcagcattactaaaatactataaaaagaggtatgttagtacctgatgtgttgatgcataagccaaagccttttctcttct 403  Q
    |||||||||||||||||||| |  ||||||||||| ||||  ||||||||||| |||||||||||||| |||||||||||  |||||||| ||| ||||     
T  44188359 tttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtacctgatgtattgatgcataaatcaaagcctattcacttcg 44188458  T
Q  404 catagcagcaatttgtctattcaacaatcttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggc 503  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44188459 catagcagcaatttgtctgttcaacaattttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtatttgc 44188558  T
Q  504 cactttagtaca 515  Q
    ||||||||||||    
T  44188559 cactttagtaca 44188570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 44187794 - 44187960
Alignment:
Q  18 caagccaattccatccccaatggggattgtttggatccataattgtggcatctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagt 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  44187794 caagccaattccatctccaatggggattgtttggatccataattgtggcatctgtaggttttgaagagttcctccatgtttgctgttagagaaattaagc 44187893  T
Q  118 tatatgttattatccatataaaactatttcatgtttgcttatcataaatcttataggaataaattata 185  Q
    |||| |||||||||||||| |||||||||||||||||||||| ||||| |||| | ||||||||||||    
T  44187894 tataggttattatccatat-aaactatttcatgtttgcttatgataaaccttaaatgaataaattata 44187960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 304 - 515
Target Start/End: Original strand, 6094520 - 6094714
Alignment:
Q  304 tttctcatttgtattgaaattcagcattactaaaatactataaaaagaggtatgttagtacctgatgtgttgatgcataagccaaagccttttctcttct 403  Q
    |||||||||||| ||||||| || ||||||||||| ||||  |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  6094520 tttctcatttgttttgaaatccaacattactaaaaaactacgaaaagaggtatgctagtacctgatgtgttgatgcataagccaaagcattttctcttct 6094619  T
Q  404 catagcagcaatttgtctattcaacaatcttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggc 503  Q
    ||||||||||||||||||  |||||||| |||||||||||| ||| |                 |||||||||||||||||||| |||||||||||||||    
T  6094620 catagcagcaatttgtctggtcaacaattttgcttggattttctctt-----------------tcccatttttctccaataggttgcaaatgtattggc 6094702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 630 - 675
Target Start/End: Original strand, 44162638 - 44162683
Alignment:
Q  630 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttc 675  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  44162638 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttc 44162683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 630 - 675
Target Start/End: Original strand, 44188758 - 44188803
Alignment:
Q  630 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttc 675  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  44188758 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttc 44188803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 630 - 675
Target Start/End: Original strand, 6094904 - 6094949
Alignment:
Q  630 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttc 675  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||    
T  6094904 ttgaacaaatacttacagcagcttgtaacttgtcaagttcattttc 6094949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 44188009 - 44188074
Alignment:
Q  230 ttagttaaaaaactgtaaagtacgatgtagcaaattgaagagttgtgattaaatgttagtgtaaaat 296  Q
    ||||||||||| | ||||| || |||||||| |||||||||||||  ||| ||||||||||||||||    
T  44188009 ttagttaaaaatc-gtaaaatatgatgtagcgaattgaagagttgcaattgaatgttagtgtaaaat 44188074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 34003608 - 34003664
Alignment:
Q  218 acataattgtttttagttaaaaaactgtaaagtacgatgtagcaaattgaagagttg 274  Q
    |||||||| |||||| || ||||||||| || || ||||| ||||||||||||||||    
T  34003608 acataattatttttaatttaaaaactgtcaaatatgatgtggcaaattgaagagttg 34003664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 6e-73; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 304 - 515
Target Start/End: Original strand, 32727486 - 32727697
Alignment:
Q  304 tttctcatttgtattgaaattcagcattactaaaatactataaaaagaggtatgttagtacctgatgtgttgatgcataagccaaagccttttctcttct 403  Q
    |||||||||||||||||||| |  ||||||||||| ||||  ||||||||||| |||||||||||||| |||||||||||  |||||||| ||| ||||     
T  32727486 tttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtacctgatgtattgatgcataaatcaaagcctattcacttcg 32727585  T
Q  404 catagcagcaatttgtctattcaacaatcttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggc 503  Q
    |||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  32727586 catagcagcaatttgtctgttaaacaattttgcttggatttgctcctttgattgtgaactataatcccgtttttctccaataggctgcaaatgtatttgc 32727685  T
Q  504 cactttagtaca 515  Q
    ||||||||||||    
T  32727686 cactttagtaca 32727697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 32726923 - 32727093
Alignment:
Q  19 aagccaattccatccccaatggggattgtttggatccataattgtggcatctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagtt 118  Q
    |||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |    
T  32726923 aagccaattccatctccaatggggattgtttggatccataactgtagcatctgtaggttttgaagggttcctccatgtttgctgttagagaaattaagct 32727022  T
Q  119 atatgttattatccatataaaactatttcatgtttgcttatcataaatcttataggaataaattatatgtat 190  Q
    ||| |||||||||||||| |||||||||||||||||||||| ||||| |||| | |||||||||||| ||||    
T  32727023 ataggttattatccatat-aaactatttcatgtttgcttatgataaaccttaaatgaataaattataagtat 32727093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 630 - 675
Target Start/End: Original strand, 32727886 - 32727931
Alignment:
Q  630 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttc 675  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  32727886 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttc 32727931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 630 - 675
Target Start/End: Original strand, 32718902 - 32718947
Alignment:
Q  630 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttc 675  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  32718902 ttgaataaatacttacagcagcttgtaacttgtcaagttccttttc 32718947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 32727136 - 32727201
Alignment:
Q  230 ttagttaaaaaactgtaaagtacgatgtagcaaattgaagagttgtgattaaatgttagtgtaaaat 296  Q
    ||||||||||| | ||||| || ||||||||||||||||||||||  ||| ||||||||||||||||    
T  32727136 ttagttaaaaatc-gtaaaatatgatgtagcaaattgaagagttgcaattgaatgttagtgtaaaat 32727201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 13898017 - 13897976
Alignment:
Q  238 aaaactgtaaagtacgatgtagcaaattgaagagttgtgatt 279  Q
    ||||||||||| || ||||| |||||||||||||||||||||    
T  13898017 aaaactgtaaaatatgatgtggcaaattgaagagttgtgatt 13897976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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