View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13299_low_4 (Length: 616)
Name: NF13299_low_4
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13299_low_4 |
 | |
|
| [»] scaffold0572 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 78 - 607
Target Start/End: Original strand, 41553784 - 41554316
Alignment:
| Q |
78 |
taattgtatttgtatgggtaaatatattgatat---tattgatattatggatgaatttaatacattgaaggagggaaatgatgatttaaaattaaaaaac |
174 |
Q |
| |
|
||||||||||||||||||||||| ||| | || ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
41553784 |
taattgtatttgtatgggtaaatgtatgggtaaatatatcgatattatggatgaatttaatacattaaaggagggaaatgatgatttaaaattaaaaaac |
41553883 |
T |
|
| Q |
175 |
gcatttaatagtgtggatgggaaaatcacatccaaggtgtagtgtaccttggaagtctccttctcttggctcggtttctcttaatgtggatggtagtgtt |
274 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41553884 |
gcgtttaatagtgtggatgggaaaatcacatccaaggtgtcacttaccttggaagtctccctctcttggctcggtttctcttaatgtggatggtagtgtt |
41553983 |
T |
|
| Q |
275 |
tttacgagttcatgttcaacagagtttgggggtcttattcgagatcatgaagactattttctacatggtttctatggtaatattgacccctcttgtattt |
374 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41553984 |
ttcacgagttcatgttcaacagagtttgggggtcttattcgagatcatgaaggctattttctacatggtttctatggtaatattgacccctattgtattt |
41554083 |
T |
|
| Q |
375 |
tacatgctgagattcttgcactttatcatagtcttgatttgtgttggtcgactaattttcggcgagttatttgctattcagaatccttgaatgtaattca |
474 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41554084 |
tacatgctgagattcttgcactttatcatggtcttgatttgtgttggtcgactaattttcggcgagttatttgctattcagaattcttgaatgtaattca |
41554183 |
T |
|
| Q |
475 |
attggttcaatatccacttaatatgtttcacaaattgggtaacttgagtcaatattagattgttgatttgtgtcatactcttcagaaaaacaactatgct |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
41554184 |
attggttcaatatccacttaatatgtttcacaaattgggtaacttgagtcaatgttagattgttgatttgtgtcatactcttcggaaaaacaactctgct |
41554283 |
T |
|
| Q |
575 |
gctgagaaatattagtacttagatatagctcct |
607 |
Q |
| |
|
| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
41554284 |
gttgagaaaaattagtacttagatacagctcct |
41554316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 41552989 - 41553074
Alignment:
| Q |
1 |
gttcctttgtttccatcgatttgtttttaattacatttagcagtcagaatcttctcgatgttgcggtcaactctttttaattgtat |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41552989 |
gttcctttgtttccatcgatttgtttttaattacatttagcagtcagaatcttctcgatgttgcggtcaaccctttttaattgtat |
41553074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 305 - 495
Target Start/End: Complemental strand, 23924122 - 23923934
Alignment:
| Q |
305 |
ggtcttattcgagatcatgaagactattttctacatggtttctatggtaatattgacccctcttgtattttacatgctgagattcttgcactttatcata |
404 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| |||||||||| ||||||||| ||||||||||| ||| || ||||||||| |||||||| ||| |
|
|
| T |
23924122 |
ggtcctattcgagatcatgaaggctcttttctaggaggtttctatgataatattgatccctcttgtatcttatttgttgagattctcgcactttaccatg |
23924023 |
T |
|
| Q |
405 |
gtcttgatttgtgttggtcgactaattttcggcgagttatttgctattcagaatccttgaatgtaattcaattggttcaatatccacttaa |
495 |
Q |
| |
|
||| |||||||||||||||||| |||||| | | |||||| |||||| | |||||| |||| ||||| || ||| | |||||||||| |
|
|
| T |
23924022 |
gtc--gatttgtgttggtcgactggttttcgaagggctatttgttattcatattccttgcatgtgattcagtttgtttaggatccacttaa |
23923934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 557
Target Start/End: Complemental strand, 23923742 - 23923702
Alignment:
| Q |
517 |
cttgagtcaatattagattgttgatttgtgtcatactcttc |
557 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
23923742 |
cttgagtcaagattggattgttgatttgtgtcatcctcttc |
23923702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 215 - 521
Target Start/End: Original strand, 25437918 - 25438224
Alignment:
| Q |
215 |
agtgtaccttggaagtctccttctcttggctcggtttctcttaatgtggatggtagtgtttttacgagttcatgttcaacagagtttgggggtcttattc |
314 |
Q |
| |
|
|||||| |||||||||| || ||||||||||| |||||||||||||||||||||| | ||||||| || | ||| ||||| |||||| |||||||||| |
|
|
| T |
25437918 |
agtgtatcttggaagtccccc-ctcttggctcgatttctcttaatgtggatggtagcatgtttacgaatttaggtttaacagggtttggtggtcttattc |
25438016 |
T |
|
| Q |
315 |
gagatcatgaagactatttt-ctacatggtttctatggtaatattgacccctcttgtattttacatgctgagattcttgcactttatcatagtcttgatt |
413 |
Q |
| |
|
|||||||||||| || |||| |||| ||||||||| ||||||||||| | ||||||||| ||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
25438017 |
gagatcatgaaggctctttttctacgtggtttctacggtaatattgatctctcttgtatattacatgtcgagattcttgcactttatcatggtcttgatt |
25438116 |
T |
|
| Q |
414 |
tgtgttggtcgactaattttcggcgagttatttgctattcagaatccttgaatgtaattcaattggttcaatatccacttaatatgtttcacaaattggg |
513 |
Q |
| |
|
|||| ||||| ||| || |||||||||||||||||||||||| |||||| |||| ||| || ||||| ||| ||||||||||||||||||||| | |
|
|
| T |
25438117 |
tgtgctggtcaactggttatcggcgagttatttgctattcagattccttgcatgtgattatgttagttcaggatctacttaatatgtttcacaaatttag |
25438216 |
T |
|
| Q |
514 |
taacttga |
521 |
Q |
| |
|
|||||||| |
|
|
| T |
25438217 |
taacttga |
25438224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 463
Target Start/End: Complemental strand, 21421311 - 21421213
Alignment:
| Q |
366 |
cttgtattttacatgctgaga-ttcttgcactttatcatagtcttgatttgtgttggtcgactaattttcggcgagttatttgctattcagaatccttg |
463 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||| || ||||||||||| |||||||| | || |||||||| |||||||||||| |||||| |
|
|
| T |
21421311 |
cttgtattttacatgctgagattttttgaactttattatgatcttgatttgtattggtcgattggccatcagcgagttaattgctattcagattccttg |
21421213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 237 - 521
Target Start/End: Original strand, 19891022 - 19891308
Alignment:
| Q |
237 |
ctcttggctcggtttctcttaatgtggatggtagtgtttttacgagttcatgttcaacagagtttgggggtcttattcgagatcatgaagactattttct |
336 |
Q |
| |
|
|||||| |||| |||||||||||||||||| ||| || ||||| | |||| ||| ||||| |||||| ||||| |||||||||||||| || ||||| |
|
|
| T |
19891022 |
ctcttgtctcgatttctcttaatgtggatgatagcgtatttacaaattcaggtttaacagggtttggtcatcttactcgagatcatgaaggctcctttct |
19891121 |
T |
|
| Q |
337 |
acatggtttctatggtaatattgacccctcttgtattttacatgctgagattcttgcactttatcatagtcttgatttgtgttggtcgactaattttcgg |
436 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||||||| | |||||| ||||||| ||| |||| ||||||||||||| || || | || |
|
|
| T |
19891122 |
acatggtttatatggtaatattgatccctcttgtatcttacatgctaaaattctttcactttaccatggtctggatttgtgttggttgatcggttgttgg |
19891221 |
T |
|
| Q |
437 |
cgagttatttgctattcaga--atc-cttgaatgtaattcaattggttcaatatccacttaatatgtttcacaaattgggtaacttga |
521 |
Q |
| |
|
||||||||||| |||||||| ||| |||| |||| ||| || | ||||| |||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
19891222 |
cgagttatttgttattcagatcatctcttgcatgtgatt-aagttgttcaggatccacttaatacgtttcacatatttggtaacttga |
19891308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 343 - 521
Target Start/End: Original strand, 19717901 - 19718080
Alignment:
| Q |
343 |
tttctatggtaatattgacccctcttgtattttacatgctgagattcttgcactttatcatagtcttgatttgtgttggtcgactaattttcggcgagtt |
442 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||| || | |||||||||||||||||| ||||||||||||| |
|
|
| T |
19717901 |
tttctacggtaatattgatccctcttgtatcttacatgttgagattcttgcactttaccatggtttggatttgtgttggtcgactggttttcggcgagtt |
19718000 |
T |
|
| Q |
443 |
atttgc-tattcagaatccttgaatgtaattcaattggttcaatatccacttaatatgtttcacaaattgggtaacttga |
521 |
Q |
| |
|
|||||| |||||||| |||| ||| ||| | |||||||| ||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
19718001 |
atttgcttattcagatctcttgcatgcgattaagttggttcaggatccacttaatatatttcacagatttggtaacttga |
19718080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 248 - 380
Target Start/End: Complemental strand, 8208 - 8076
Alignment:
| Q |
248 |
gtttctcttaatgtggatggtagtgtttttacgagttcatgttcaacagagtttgggggtcttattcgagatcatgaagactattttctacatggtttct |
347 |
Q |
| |
|
|||||||| |||||||||||||| || |||| || |||| || ||||| |||||| ||||||||| |||||||||||| || |||||||| |||||||| |
|
|
| T |
8208 |
gtttctctaaatgtggatggtagcgtgtttaggaattcacctttaacagggtttggtggtcttatttgagatcatgaaggctcttttctacgtggtttct |
8109 |
T |
|
| Q |
348 |
atggtaatattgacccctcttgtattttacatg |
380 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8108 |
atggtaatattgatccctcttatattttacatg |
8076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 521
Target Start/End: Complemental strand, 8067 - 7979
Alignment:
| Q |
433 |
tcggcgagttatttgctattcagaatccttgaatgtaattcaattggttcaatatccacttaatatgtttcacaaattgggtaacttga |
521 |
Q |
| |
|
||||||| |||||||| ||||| | |||||| |||| ||||| |||||||| | |||||||||||||| |||| ||| |||||||||| |
|
|
| T |
8067 |
tcggcgaattatttgcaattcaaattccttgcatgtgattcagttggttcagaacccacttaatatgttacacagatttggtaacttga |
7979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 248 - 380
Target Start/End: Complemental strand, 41406671 - 41406539
Alignment:
| Q |
248 |
gtttctcttaatgtggatggtagtgtttttacgagttcatgttcaacagagtttgggggtcttattcgagatcatgaagactattttctacatggtttct |
347 |
Q |
| |
|
|||||||| |||||||||||||| || |||| || |||| || ||||| |||||| ||||||||| |||||||||||| || |||||||| |||||||| |
|
|
| T |
41406671 |
gtttctctaaatgtggatggtagcgtgtttaggaattcacctttaacagggtttggtggtcttatttgagatcatgaaggctcttttctacgtggtttct |
41406572 |
T |
|
| Q |
348 |
atggtaatattgacccctcttgtattttacatg |
380 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |
|
|
| T |
41406571 |
atggtaatattgatccctcttatattttacatg |
41406539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 521
Target Start/End: Complemental strand, 41406530 - 41406442
Alignment:
| Q |
433 |
tcggcgagttatttgctattcagaatccttgaatgtaattcaattggttcaatatccacttaatatgtttcacaaattgggtaacttga |
521 |
Q |
| |
|
||||||| |||||||| ||||| | |||||| |||| ||||| |||||||| | |||||||||||||| |||| ||| |||||||||| |
|
|
| T |
41406530 |
tcggcgaattatttgcaattcaaattccttgcatgtgattcagttggttcagaacccacttaatatgttacacagatttggtaacttga |
41406442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 355 - 523
Target Start/End: Original strand, 7220219 - 7220387
Alignment:
| Q |
355 |
tattgacccctcttgtattttacatgctgagattcttgcactttatcatagtcttgatttgtgttggtcgactaattttcggcgagttatttgctattca |
454 |
Q |
| |
|
|||||| |||| |||||| ||||||| |||||||||| ||||||| || ||| |||||||||||||||| | ||| | |||||||||||| |||||| |
|
|
| T |
7220219 |
tattgatccctgttgtatcttacatggtgagattcttccactttaccacgatctagatttgtgttggtcgattgattgccagcgagttatttgttattca |
7220318 |
T |
|
| Q |
455 |
gaatccttgaatgtaattcaattggttcaatatccacttaatatgtttcacaaattgggtaacttgagt |
523 |
Q |
| |
|
|| |||||| || | ||| | | |||||| ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
7220319 |
gattccttgcatatgattaagtcggttcacgatccacttaatatgtttcacaggtttggtaacttgagt |
7220387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 4177764 - 4177861
Alignment:
| Q |
283 |
ttcatgttcaacagagtttgggggtcttattcgagatcatgaagactattttctacatggtttctatggtaatattgacccctcttgtattttacatg |
380 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||| ||| |||||||| || | |||||| || ||| |||| ||||||||| ||| |||||||||| |||| |
|
|
| T |
4177764 |
ttcaggtttaacagagtttggtggtcttattggagctcatgaaggctctattctacgtgatttttatgataatattgatcccccttgtattttgcatg |
4177861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 248 - 380
Target Start/End: Complemental strand, 20972423 - 20972291
Alignment:
| Q |
248 |
gtttctcttaatgtggatggtagtgtttttacgagttcatgttcaacagagtttgggggtcttattcgagatcatgaagactattttctacatggtttct |
347 |
Q |
| |
|
|||| ||| |||||||||||||| || ||||||| |||| || ||||| |||||| ||| |||| |||||||||||| || |||| ||| |||||||| |
|
|
| T |
20972423 |
gtttttctaaatgtggatggtagcgtgtttacgaattcacctttaacagggtttggtggtaatatttgagatcatgaaggctcttttttacttggtttct |
20972324 |
T |
|
| Q |
348 |
atggtaatattgacccctcttgtattttacatg |
380 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |
|
|
| T |
20972323 |
atggtaatattgatccctcttatattttacatg |
20972291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 557
Target Start/End: Complemental strand, 20972174 - 20972134
Alignment:
| Q |
517 |
cttgagtcaatattagattgttgatttgtgtcatactcttc |
557 |
Q |
| |
|
||||||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
20972174 |
cttgagttaagattggattgttgatttgtgtcatactcttc |
20972134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 433 - 521
Target Start/End: Complemental strand, 20972282 - 20972194
Alignment:
| Q |
433 |
tcggcgagttatttgctattcagaatccttgaatgtaattcaattggttcaatatccacttaatatgtttcacaaattgggtaacttga |
521 |
Q |
| |
|
||||||| |||||| | ||||| | |||||| |||| ||||| |||||||| | |||||||||||||| || | ||| |||||||||| |
|
|
| T |
20972282 |
tcggcgaattatttacaattcaaattccttgcatgtgattcagttggttcaggacccacttaatatgttacaaagatttggtaacttga |
20972194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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