View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13299_low_5 (Length: 595)
Name: NF13299_low_5
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13299_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 182 - 578
Target Start/End: Original strand, 25378559 - 25378955
Alignment:
| Q |
182 |
aaatgatagattcatcattttagaatcaccagcagcagcactaataaaactgagcagaagaaaccaactccaacaaatccatctctctcttcccctctga |
281 |
Q |
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| T |
25378559 |
aaatgatagattcatcattttagaatcaccagcagcagcactaataaaactgagcagaagaaaccaactccaacaaatccatctctctcttcccctctga |
25378658 |
T |
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| Q |
282 |
aaaattcatattcccaagatgcaactcaacgttgttctgattctgaattccattcagcattggaggaaggtagtggtcagaattaaggtaattcatcata |
381 |
Q |
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| T |
25378659 |
aaaattcatattcccaagatgcaactccacgttgttctgattctgaattccattcagcattggaggaaggtagtggtcagaattaaggtaattcatcata |
25378758 |
T |
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| Q |
382 |
ggtgtcgaagaagtactcaagtacatgttgttttgtgaatttggcttagggtaattggaaggattggaatgaacaaatccacaatcagtaacatcaggga |
481 |
Q |
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| T |
25378759 |
ggtgtggaagaagtactcaagtacatgttgttttgtgaatttggcttagggtaattggaaggattggaatgaacaaatccacaatcagtaacatcaggga |
25378858 |
T |
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| Q |
482 |
gaatctgattactgttagtttgggaagaataatccaatggataagagtttgaagagggtttcttggagtaggggttaacaggttcagcattattatt |
578 |
Q |
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| T |
25378859 |
gaatctgattactgttagtttgggaagaataatccaatggataagagtttgaagagggtttcttggagtaggggttaacaggttcagcattattatt |
25378955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 25378377 - 25378513
Alignment:
| Q |
1 |
aaacaaaccatagttaaacaaatccaaagtggaaagtacatactaaaacaaaacaaagtcaagactaaacaatccaaattaatgtcaaatgcatactacc |
100 |
Q |
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| T |
25378377 |
aaacaaaccatagttaaaccaatccaaagtggaaagtacatactaaaacaaaacaaagtcaagactaaacaatccaaattaatgtcaaatgcatactacc |
25378476 |
T |
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| Q |
101 |
atgctatagtggaagcatggtttatcaaacgtggaag |
137 |
Q |
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| T |
25378477 |
atgctatagtggaagcatggtttatcaaacgtggaag |
25378513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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