View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13299_low_7 (Length: 509)

Name: NF13299_low_7
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13299_low_7
NF13299_low_7
[»] chr2 (9 HSPs)
chr2 (228-476)||(32445215-32445463)
chr2 (18-191)||(32445002-32445175)
chr2 (102-180)||(32438373-32438451)
chr2 (26-69)||(32438282-32438325)
chr2 (229-318)||(32438472-32438561)
chr2 (360-399)||(28037314-28037353)
chr2 (380-470)||(11985087-11985177)
chr2 (362-440)||(27477336-27477414)
chr2 (358-414)||(9374374-9374430)
[»] chr5 (2 HSPs)
chr5 (365-492)||(11192502-11192629)
chr5 (382-487)||(28235723-28235831)
[»] chr3 (1 HSPs)
chr3 (388-492)||(30293348-30293451)
[»] chr7 (1 HSPs)
chr7 (357-487)||(3861076-3861206)
[»] chr1 (2 HSPs)
chr1 (360-440)||(6017709-6017789)
chr1 (360-402)||(799665-799707)
[»] chr6 (1 HSPs)
chr6 (344-399)||(25337790-25337845)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 228 - 476
Target Start/End: Original strand, 32445215 - 32445463
Alignment:
Q  228 ttcacatgggcatactataattggcttcaaccaacgtgcagtttgttcggttatatattccttaccggaatccaaatgtcgttattatagattattttat 327  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32445215 ttcacatgggcatactataattggcttcaactaacgtgcagtttgttcggttatatattccttaccggaatccaaatgtcgttattatagattattttat 32445314  T
Q  328 ttattac----catgttaactcattcaaacaagtagagtacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatcca 423  Q
    |||||||    |||||||||||||||||| ||||||||||||    |||||| | ||||||| |||||||||||||||||||| ||| ||| || |||||    
T  32445315 ttattacaaaacatgttaactcattcaaataagtagagtaca----ttaacactgttaaaaacgtaaatgatgaatatgccaacaaactcactacatcca 32445410  T
Q  424 agttaataatatataactgcaaaactcttacaaataataagataaaattaaag 476  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32445411 agttaataacatataactgcaaaactcttacaaataataagataaaattaaag 32445463  T

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Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 32445002 - 32445175
Alignment:
Q  18 gaattgataccgaccaaacccattcataaattgtcctttccacgatagaccttgaattcagatagagtaaagnnnnnnngtaaccccatctgaaatttgc 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||| |||    
T  32445002 gaattgataccgaccaaacccattcagaaattgtcctttccacgatagaccttgaattcagatagagtaaagaaaaaaagtagccccatctgaaatctgc 32445101  T
Q  118 atcaatttacataacatgatgaaagtgtttgggttctaatcacatgacagcaactatttccaatcttgtcaagg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32445102 atcaatttacataacatgatgaaagtgtttgggttctaatcacatgacagcaactatttccaatcttgtcaagg 32445175  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 32438373 - 32438451
Alignment:
Q  102 cccatctgaaatttgcatcaatttacataacatgatgaaagtgtttgggttctaatcacatgacagcaactatttccaa 180  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  32438373 cccacctgaaatttgcatcaatttacatagcatgatgaaagtgtttgggttctaatcacatgacaacacctatttccaa 32438451  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 32438282 - 32438325
Alignment:
Q  26 accgaccaaacccattcataaattgtcctttccacgatagacct 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32438282 accgaccaaacccattcataaattgtcctttccacgatagacct 32438325  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 318
Target Start/End: Original strand, 32438472 - 32438561
Alignment:
Q  229 tcacatgggcatactataattggcttcaaccaacgtgcagtttgttcggttatatattccttaccggaatccaaatgtcgttattataga 318  Q
    |||||||| ||| |||||| ||||| |||| ||| ||| |||| ||||| |||||||||| ||||||||||||| ||||||| |||||||    
T  32438472 tcacatggtcatgctataaatggctccaactaacatgctgttttttcggctatatattccctaccggaatccaactgtcgttcttataga 32438561  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 28037353 - 28037314
Alignment:
Q  360 agtacatcatttaacattattaaaaatgtaaatgatgaat 399  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  28037353 agtacatcatttaacatcgttaaaaatgtaaatgatgaat 28037314  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 470
Target Start/End: Original strand, 11985087 - 11985177
Alignment:
Q  380 taaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataactgcaaaactcttacaaataataagataaaa 470  Q
    |||||| ||||||||||||| ||| || |||||||  | |||||||||||||  ||| ||| ||||||  | ||||||||||| |||||||    
T  11985087 taaaaacgtaaatgatgaatttgcgaacaaattcacaacatccaagttaataggatacaacagcaaaatgcctacaaataatatgataaaa 11985177  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 27477414 - 27477336
Alignment:
Q  362 tacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataac 440  Q
    ||||||||| |||||| ||||||||||||||||||||| ||| || | | |||  | ||||||||||||| ||| ||||    
T  27477414 tacatcattcaacattgttaaaaatgtaaatgatgaatctgcgaacatactcacaacatccaagttaatagtatttaac 27477336  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 9374374 - 9374430
Alignment:
Q  358 agagtacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattca 414  Q
    ||||||||||||| ||||    |||||| ||||||||||||||||| ||||||||||    
T  9374374 agagtacatcattcaacacggctaaaaacgtaaatgatgaatatgcgaaaaaattca 9374430  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 492
Target Start/End: Complemental strand, 11192629 - 11192502
Alignment:
Q  365 atcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataactgcaaaactcttacaaataataag 464  Q
    ||||||||| ||  ||||||| ||||||||| ||  |||||| ||||| |  | ||| |||||||||| ||| |||  |||||  ||||||||||||| |    
T  11192629 atcatttaatatcgttaaaaacgtaaatgataaacctgccaacaaatttacaacatcaaagttaataacatacaacgacaaaatgcttacaaataatacg 11192530  T
Q  465 ataaaattaaagggatcgaaatactcat 492  Q
    ||||| |||||| |||||||||||||||    
T  11192529 ataaatttaaagtgatcgaaatactcat 11192502  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 487
Target Start/End: Complemental strand, 28235831 - 28235723
Alignment:
Q  382 aaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaata--atatataactgcaaaactcttacaaata-ataagataaaattaaaggg 478  Q
    |||||||||||||||||| ||| || ||| |||  | |||||||||||||  ||||||||| ||| ||  | |||||| | ||| ||||||||||||| |    
T  28235831 aaaatgtaaatgatgaatctgcgaacaaactcacaacatccaagttaatagcatatataacggcataatgcctacaaaaatatatgataaaattaaagtg 28235732  T
Q  479 atcgaaata 487  Q
    |||||||||    
T  28235731 atcgaaata 28235723  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 492
Target Start/End: Original strand, 30293348 - 30293451
Alignment:
Q  388 taaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataactgcaaaactcttacaaataataagataaaattaaagggatcgaaata 487  Q
    |||| ||||||| ||| || ||| |||| | |||||||||||||  ||||||| ||||||| ||||||||||||| |||||| |||| | || |||||||    
T  30293348 taaaagatgaatctgcaaataaactcatgacatccaagttaatagcatataac-gcaaaacacttacaaataatatgataaagttaatgtgaccgaaata 30293446  T
Q  488 ctcat 492  Q
    |||||    
T  30293447 ctcat 30293451  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 487
Target Start/End: Complemental strand, 3861206 - 3861076
Alignment:
Q  357 tagagtacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataactgcaaaactcttacaa 456  Q
    ||||||||  |||| ||||| | |||||| |||||| |||||||||  || ||| |||| | ||||||||| |||| ||||||  ||||||  | ||||     
T  3861206 tagagtaccccattcaacatcactaaaaacgtaaattatgaatatgtgaacaaactcataacatccaagttgataacatataatggcaaaaagcctacac 3861107  T
Q  457 ataataagataaaattaaagggatcgaaata 487  Q
    |||||| ||||||||||||| || |||||||    
T  3861106 ataatatgataaaattaaagtgaccgaaata 3861076  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 440
Target Start/End: Complemental strand, 6017789 - 6017709
Alignment:
Q  360 agtacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataac 440  Q
    |||||||| || ||| |||||||||||  ||||||||||| ||| || |||||||  | ||||||||||||| ||||||||    
T  6017789 agtacatctttcaacgttattaaaaataaaaatgatgaatctgcaaataaattcacaacatccaagttaatagtatataac 6017709  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 402
Target Start/End: Original strand, 799665 - 799707
Alignment:
Q  360 agtacatcatttaacattattaaaaatgtaaatgatgaatatg 402  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||    
T  799665 agtacatcattcaacatcattaaaaacgtaaatgatgaatatg 799707  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 25337845 - 25337790
Alignment:
Q  344 tcattcaaacaagtagagtacatcatttaacattattaaaaatgtaaatgatgaat 399  Q
    |||||||||  | ||||||||||||||||||| || ||||||| ||||||||||||    
T  25337845 tcattcaaattaatagagtacatcatttaacactactaaaaatataaatgatgaat 25337790  T

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