View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13299_low_8 (Length: 502)
Name: NF13299_low_8
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13299_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 270 - 496
Target Start/End: Original strand, 39608938 - 39609164
Alignment:
| Q |
270 |
gaatcatgaggagtttgacaccgtgggtttgttgaaacttcaaactgaaactttaaagtgtaactttagccaaaatcatggtggctcaccatcattccat |
369 |
Q |
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| T |
39608938 |
gaatcatgaggagtttgacaccgtgggtttgttgaaactttaaactgaaactttaaagtgtaactttagccaaaatcatggtggctcaccatcattccat |
39609037 |
T |
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| Q |
370 |
caaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaatccaaacatgatttatagtctcgattttattcaaacatagatcactt |
469 |
Q |
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| T |
39609038 |
caaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaattcaaacatgatttatagtctcgattttattcaaacatagatcactt |
39609137 |
T |
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| Q |
470 |
tatagtcaatttaactgttcatctcac |
496 |
Q |
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| T |
39609138 |
tatagtcaatttaactgttcatttcac |
39609164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 39608685 - 39608872
Alignment:
| Q |
17 |
cattataggtataagattaaaaaatgcatgatgataaatttgtgtcatatcaatcaattttctaatgtggatcgactatctattgatcaagcagattact |
116 |
Q |
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| T |
39608685 |
cattataggtataagattaaaaaatgcatgatgataaatttgtgtcatatcaatcaattttctaatgtggatcgactatctattgatcaagcagattact |
39608784 |
T |
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| Q |
117 |
tggcctctgctggttttctttgattttcatgtttggatattcacttttatttacgagaaactaaagtgattctaggaacataaaattg |
204 |
Q |
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| T |
39608785 |
tggcctctgctggttttctttgattttcatgtttgcatattcacttttatttacgagaaactaaagtgattctaggaacataaaattg |
39608872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 369 - 453
Target Start/End: Original strand, 39609469 - 39609553
Alignment:
| Q |
369 |
tcaaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaatccaaacatgatttatagtctcgattttatt |
453 |
Q |
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|||| ||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39609469 |
tcaatccaaacatgtactaactctaacttgaaattttgatttggaatttttaaatccaaacatgatttatagtctcaattttatt |
39609553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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