View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13299_low_9 (Length: 444)
Name: NF13299_low_9
Description: NF13299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13299_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 59 - 444
Target Start/End: Original strand, 42548255 - 42548642
Alignment:
| Q |
59 |
ttatgttaagtcacgttgcgtgagataactcacgctgccttgg-aaaaaataattgatcaacccaattcaagagaaaaggaatcaacaaaggaatttaat |
157 |
Q |
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| T |
42548255 |
ttatgttaagtcatgttgcgtgagataactcacgctgctttgggaaaaaataattgatcaacccaattcaaga--aaaggaatcaacaaaggaatttaat |
42548352 |
T |
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| Q |
158 |
tccccaattccaaagcgatttcgattgcgaaatgattgcaaatctgaactcattcaaagcatatattgctcgctgaaatcaattccccaattccttatat |
257 |
Q |
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| T |
42548353 |
tccccaattccaaatcgatttcgattgcgaaatgattgcaaatctgaactcattcaaagcatatattgctcgctgaaatcaattccccaattccttatat |
42548452 |
T |
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| Q |
258 |
attgccgacacaattaagacttgtttaatgtgtaaattctccaatgaagactcattaaaagca---tatattgcagtatgtaaattctcccatgtaagat |
354 |
Q |
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| T |
42548453 |
attgccgacacaattaagacttgtttaatgtgtaaattctccagtgaagactcattaaaagcatgctatattgcagtaggtaaattctcccatgtaagac |
42548552 |
T |
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| Q |
355 |
ttgtttgccgacacaattaattggtgtagttaaaggaggggttgaaaaattggaaacaaaccaaccgtttcagtgaacaacgatttggaa |
444 |
Q |
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| T |
42548553 |
ttgtttgccgacagaattaattggtgtagttaaaggaggggttgaaaaattggaaacaaaccaaccgtttcagtgaacaacgatttggaa |
42548642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 18768422 - 18768459
Alignment:
| Q |
21 |
catggcacctgccagccccttaaaagatccgccactgt |
58 |
Q |
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| T |
18768422 |
catggcacctgcctgccccttagaagatccgccactgt |
18768459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 15974198 - 15974234
Alignment:
| Q |
21 |
catggcacctgccagccccttaaaagatccgccactg |
57 |
Q |
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| T |
15974198 |
catggcacctgcctgccccttagaagatccgccactg |
15974234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 28866488 - 28866524
Alignment:
| Q |
21 |
catggcacctgccagccccttaaaagatccgccactg |
57 |
Q |
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| T |
28866488 |
catggcacctgcctgccccttagaagatccgccactg |
28866524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 26494438 - 26494398
Alignment:
| Q |
17 |
atgtcatggcacctgccagccccttaaaagatccgccactg |
57 |
Q |
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| T |
26494438 |
atgtcatggcacctgcctgccctttagaagatccgccactg |
26494398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 29096133 - 29096097
Alignment:
| Q |
21 |
catggcacctgccagccccttaaaagatccgccactg |
57 |
Q |
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| T |
29096133 |
catggcacctgcctgccccttagaagatccgccactg |
29096097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 37987247 - 37987283
Alignment:
| Q |
21 |
catggcacctgccagccccttaaaagatccgccactg |
57 |
Q |
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| T |
37987247 |
catggcacctgcctgccccttagaagatccgccactg |
37987283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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