View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1329_high_9 (Length: 251)

Name: NF1329_high_9
Description: NF1329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1329_high_9
NF1329_high_9
[»] chr7 (6 HSPs)
chr7 (1-222)||(26796197-26796418)
chr7 (1-222)||(26807036-26807257)
chr7 (1-222)||(26583008-26583229)
chr7 (1-221)||(26830867-26831087)
chr7 (1-222)||(26837326-26837547)
chr7 (1-222)||(26801119-26801340)
[»] chr4 (1 HSPs)
chr4 (10-120)||(10170779-10170889)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26796418 - 26796197
Alignment:
Q  1 aatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttctttggtattaccagctaga 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26796418 aatgttgttagattcaccagcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttctttggtattaccagctaga 26796319  T
Q  101 aacacatctaatttggtcttcatctggattagggatgatctcttcaatgtaaatataagatctttagaatttgtgctttctcctctataagcttcccacc 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||| ||||| || ||||||||||||||||    
T  26796318 aacacatctaatttggtcttcatctggattagagatgatctcttcaatgtaaatataagatctttagcatgtgtactttcacccctataagcttcccacc 26796219  T
Q  201 gatcatgcatagtcactatctg 222  Q
    ||||||||||||||||||||||    
T  26796218 gatcatgcatagtcactatctg 26796197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26807257 - 26807036
Alignment:
Q  1 aatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttctttggtattaccagctaga 100  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||| || || |||||||||||||| || |||  ||| |||    
T  26807257 aatgttgttagattcaccggcataaacaatacaagatcgttcgaaccaactacctttgactttgaagtcgcaaacatcttcttttgtgttattagcaaga 26807158  T
Q  101 aacacatctaatttggtcttcatctggattagggatgatctcttcaatgtaaatataagatctttagaatttgtgctttctcctctataagcttcccacc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  26807157 aacacatctaatttggtcttcatctggattagggatgatctcttcaatgtaaatataagatctttagaatctgtgctttcacccctataagcttcccacc 26807058  T
Q  201 gatcatgcatagtcactatctg 222  Q
    ||||||||||||||||||||||    
T  26807057 gatcatgcatagtcactatctg 26807036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26583008 - 26583229
Alignment:
Q  1 aatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttctttggtattaccagctaga 100  Q
    |||||||||||  ||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  26583008 aatgttgttagtatcaccagcataaacaatacaagatcgttccaaccaactacctttgactttaaaatcacaaacatcttctttggtattatcagctaga 26583107  T
Q  101 aacacatctaatttggtcttcatctggattagggatgatctcttcaatgtaaatataagatctttagaatttgtgctttctcctctataagcttcccacc 200  Q
    |||||||||| ||| | ||||| ||| | ||| |||||| |  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26583108 aacacatctagttttgccttcaactgcaatagcgatgattttctcaatgtaaatataagatctttagaatttgtgctttctcctctgtaagcttcccacc 26583207  T
Q  201 gatcatgcatagtcactatctg 222  Q
    ||||||||||||||||||||||    
T  26583208 gatcatgcatagtcactatctg 26583229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26831087 - 26830867
Alignment:
Q  1 aatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttctttggtattaccagctaga 100  Q
    |||||| ||||||||||| |||||||||||||||||||||||  ||||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  26831087 aatgttattagattcaccagcataaacaatgcaagatcgttcagaccaactacctttgactttaaagtcacaaacatcttctttggtattaccagctaga 26830988  T
Q  101 aacacatctaatttggtcttcatctggattagggatgatctcttcaatgtaaatataagatctttagaatttgtgctttctcctctataagcttcccacc 200  Q
    || ||||||||||||||||| | |||||||||||| ||||  |||| ||||||||| | || ||||| |||||||||||  |||||||| ||||||||||    
T  26830987 aatacatctaatttggtcttaaactggattagggacgatcgtttcactgtaaatatcatatttttagcatttgtgctttgacctctatacgcttcccacc 26830888  T
Q  201 gatcatgcatagtcactatct 221  Q
     |||||||||||||| |||||    
T  26830887 tatcatgcatagtcaatatct 26830867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26837547 - 26837326
Alignment:
Q  1 aatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttctttggtattaccagctaga 100  Q
    |||||| ||||||||||| ||||||||| | ||||||||||| |||||||| ||| |||||||||| ||||||||||||||||| || |||||||| |||    
T  26837547 aatgttattagattcaccagcataaacactacaagatcgttcgaaccaactccctttaactttaaagtcacaaacatcttcttttgtgttaccagcaaga 26837448  T
Q  101 aacacatctaatttggtcttcatctggattagggatgatctcttcaatgtaaatataagatctttagaatttgtgctttctcctctataagcttcccacc 200  Q
    |||||||||||||||||||| |  || |||||||| ||||  |||||||||||||| |||||||||| |||||||||||  |||||||| ||||||||||    
T  26837447 aacacatctaatttggtcttaaattgcattagggaagatcgtttcaatgtaaatattagatctttagcatttgtgctttgacctctatatgcttcccacc 26837348  T
Q  201 gatcatgcatagtcactatctg 222  Q
    ||||||||||||||| ||||||    
T  26837347 gatcatgcatagtcaatatctg 26837326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26801340 - 26801119
Alignment:
Q  1 aatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttctttggtattaccagctaga 100  Q
    |||||||||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||| |||||||||| ||||||  | |||| ||||| |    
T  26801340 aatgttgttagattcaccagcataaacaatgcaagatcgatcaaaccaactacctttaactttaaagtcacaaacattttcttttttgttactagctaaa 26801241  T
Q  101 aacacatctaatttggtcttcatctggattagggatgatctcttcaatgtaaatataagatctttagaatttgtgctttctcctctataagcttcccacc 200  Q
    || ||||||||||||||||| |  || |||||||| ||||||||||||||||||||||||||||| | || ||||||||| || ||| ||||||||||||    
T  26801240 aatacatctaatttggtcttaaattgaattagggaagatctcttcaatgtaaatataagatcttttgcatctgtgctttcacccctaaaagcttcccacc 26801141  T
Q  201 gatcatgcatagtcactatctg 222  Q
    |||| |||||||||| ||||||    
T  26801140 gatcgtgcatagtcattatctg 26801119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 10170889 - 10170779
Alignment:
Q  10 agattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttctttggtattaccagctagaaacacatct 109  Q
    ||||||||| ||||||||||  |||||||| || |||||||| ||| | || |||||||||| || ||||||||| | ||||| |||||| |||||||||    
T  10170889 agattcacccgcataaacaacacaagatcgctctaaccaacttcctttgaccttaaaatcactaatatcttctttagcattactagctaggaacacatct 10170790  T
Q  110 aatttggtctt 120  Q
    |||||| ||||    
T  10170789 aatttgatctt 10170779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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