View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1329_low_12 (Length: 297)
Name: NF1329_low_12
Description: NF1329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1329_low_12 |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 62 - 297
Target Start/End: Original strand, 51751459 - 51751694
Alignment:
| Q |
62 |
atcatctccatcaccagactcagcaccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccc |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51751459 |
atcatctccatcaccagactcagcaccaacctcctcataatccttctcaagagcagcgagatcttcacgagcctctgagaactcaccttcttccataccc |
51751558 |
T |
|
| Q |
162 |
tcaccaacataccaatgcacaaaagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagaga |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51751559 |
tcaccaacataccaatgcacaaaagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagaga |
51751658 |
T |
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| Q |
262 |
tcatgcacacggccctctgcaccttggcaagatcac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
51751659 |
tcatgcacacggccctctgcaccttggcaagatcac |
51751694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 28713936 - 28713818
Alignment:
| Q |
179 |
cacaaaagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagagatcatgcacacggccctc |
278 |
Q |
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|||||| |||||||| |||||||| ||||||||||| ||||| || | |||||||||||| ||||| || ||||| || |||||||| || |||||| |
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| T |
28713936 |
cacaaatgcacgcttggcatacatcagatcaaacttgtgatcgatgcgaccaaacacctcagctacacttgtggagtttgaaatcatgcaaactgccctc |
28713837 |
T |
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| Q |
279 |
tgcaccttggcaagatcac |
297 |
Q |
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|| ||||| ||||| |||| |
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| T |
28713836 |
tgtaccttagcaaggtcac |
28713818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 93 - 297
Target Start/End: Original strand, 18306273 - 18306477
Alignment:
| Q |
93 |
tcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgcacaaaagcacgct |
192 |
Q |
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|||||||| |||||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
18306273 |
tcctcatactccttctcgagagcagcaagatcctcacgagcctgtgataactcaccttcttccataccctcacacacataccagtgcacaaaagcacgct |
18306372 |
T |
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| Q |
193 |
tagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagagatcatgcacacggccctctgcaccttggcaag |
292 |
Q |
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| |||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
18306373 |
tggcatacataagatcgaacttatggtcaattctggaaaacacttgagcaacactggtagagttagagatcattcctacagccctctgcaccttggcaag |
18306472 |
T |
|
| Q |
293 |
atcac |
297 |
Q |
| |
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||||| |
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| T |
18306473 |
atcac |
18306477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 93 - 297
Target Start/End: Complemental strand, 18163010 - 18162806
Alignment:
| Q |
93 |
tcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgcacaaaagcacgct |
192 |
Q |
| |
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|||||||| |||| ||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
18163010 |
tcctcatactcctactcgagagcagcaagatcctcacgagcctgtgataactcaccttcttccataccctcacacacataccagtgcacaaaagcacgct |
18162911 |
T |
|
| Q |
193 |
tagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagagatcatgcacacggccctctgcaccttggcaag |
292 |
Q |
| |
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| |||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
18162910 |
tggcatacataagatcgaacttatggtcaatactggaaaacacttgagcaacactggtagagttagagatcattcctacagccctctgcaccttggcaag |
18162811 |
T |
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| Q |
293 |
atcac |
297 |
Q |
| |
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||||| |
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| T |
18162810 |
atcac |
18162806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 84 - 297
Target Start/End: Original strand, 40376914 - 40377127
Alignment:
| Q |
84 |
gcaccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgcacaa |
183 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||| || ||||| ||||||||||| |||| |
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| T |
40376914 |
gcaccaacttcctcataatccttctcaagggcagcaagatcttcacgagcctcagagaactcgccttcttccatcccttcaccgacataccaatgtacaa |
40377013 |
T |
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| Q |
184 |
aagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagagatcatgcacacggccctctgcac |
283 |
Q |
| |
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| || | ||| |||||||| || ||||| || || ||||| | || || |||||||||||||| || ||||| || ||||||||||||||||||||||| |
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| T |
40377014 |
atgccctcttggcatacatgaggtcaaatttgtggtcaatgcgtgagaaaacctcagcaacactagtggagttggaaatcatgcacacggccctctgcac |
40377113 |
T |
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| Q |
284 |
cttggcaagatcac |
297 |
Q |
| |
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|||||||||||||| |
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| T |
40377114 |
cttggcaagatcac |
40377127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 297
Target Start/End: Original strand, 47927599 - 47927824
Alignment:
| Q |
72 |
tcaccagactcagcaccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacat |
171 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| || | |||||| ||||||||||| || || || || || |||||||||||||||||||| |||| |
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| T |
47927599 |
tcaccagactcggcaccaacttcttcataatccttttccaaagcagcaagatcctcacgggcttcagaaaattctccttcttccataccctcacccacat |
47927698 |
T |
|
| Q |
172 |
accaatgcacaaaagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaacactggtagagttagagatcatgcacac |
271 |
Q |
| |
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|||| || |||||||||||||| |||||||| ||||||||||| |||||||| | |||||||||||| ||||| || ||||| || |||||||| || |
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| T |
47927699 |
accagtgaacaaaagcacgcttggcatacatcagatcaaacttgtgatcaatgcgaccaaacacctcagctacacttgtggagtttgaaatcatgcaaac |
47927798 |
T |
|
| Q |
272 |
ggccctctgcaccttggcaagatcac |
297 |
Q |
| |
|
|||||||| ||||| ||||| |||| |
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| T |
47927799 |
tgccctctgtaccttagcaaggtcac |
47927824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 245
Target Start/End: Original strand, 35668821 - 35668986
Alignment:
| Q |
80 |
ctcagcaccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgc |
179 |
Q |
| |
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|||||||||||| || |||||||| ||||| |||||||| ||||| ||||| || ||||||||||| ||||||||||| |||||||| |||||||| || |
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| T |
35668821 |
ctcagcaccaacttcttcataatctttctcgagagcagcaagatcttcacgggcttctgagaactccccttcttccatgccctcaccgacataccagtga |
35668920 |
T |
|
| Q |
180 |
acaaaagcacgcttagcatacataagatcaaacttatgatcaatcctggaaaacacctcagcaaca |
245 |
Q |
| |
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||||| || | ||| |||||||| ||||| ||||| |||||||| | ||| || ||||| |||||| |
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| T |
35668921 |
acaaaggctctcttggcatacatcagatcgaacttgtgatcaatgcgggagaagacctccgcaaca |
35668986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 10031091 - 10031232
Alignment:
| Q |
85 |
caccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgcacaaa |
184 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| ||||| || | ||| ||||| || |||||||||||||| || |||| |||||||||||||||||| |
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| T |
10031091 |
caccaacttcatcataatccttttcaagagcagcaagatcttctctagcttctgaaaattcaccttcttccattccttcactaacataccaatgcacaaa |
10031190 |
T |
|
| Q |
185 |
agcacgcttagcatacataagatcaaacttatgatcaatcct |
226 |
Q |
| |
|
|| | || ||||||||||||||||| || ||||||||||| |
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| T |
10031191 |
tgctctttttgcatacataagatcaaatttgtgatcaatcct |
10031232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 33271192 - 33271050
Alignment:
| Q |
81 |
tcagcaccaacctcctcataatccttctcaagagcagcgagatcctcacgagcctctgagaactcaccttcttccataccctcaccaacataccaatgca |
180 |
Q |
| |
|
||||| ||||| || ||||| ||||| ||||||||||| |||||||| | || || || || |||||||||||||| || ||||||||||||||||| | |
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| T |
33271192 |
tcagctccaacttcttcatagtccttttcaagagcagcaagatcctccctggcttccgaaaattcaccttcttccattccttcaccaacataccaatgta |
33271093 |
T |
|
| Q |
181 |
caaaagcacgcttagcatacataagatcaaacttatgatcaat |
223 |
Q |
| |
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|||| || | ||||||||||| |||||||| ||||||||||| |
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| T |
33271092 |
caaatgcccttttagcatacatgagatcaaatttatgatcaat |
33271050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 28693626 - 28693557
Alignment:
| Q |
135 |
tctgagaactcaccttcttccataccctcaccaacataccaatgcacaaaagcacgcttagcatacataa |
204 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |
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| T |
28693626 |
tctgagaactcacattcttccataccctcacatgcataccagtgcacaaaagcacgtttagcatacataa |
28693557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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