View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1329_low_2 (Length: 638)
Name: NF1329_low_2
Description: NF1329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1329_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 114 - 630
Target Start/End: Original strand, 36650993 - 36651509
Alignment:
| Q |
114 |
tcatccttagccaatatcagactattataaatgttggcttcgccaaaacgcttttttggatactcatcacacatttcaaccaacacccacatctcctcat |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36650993 |
tcatccttagccaatatcaaactattataaatgttggcttcgccaaaacgcttttttggatactcatcacacatttcaaccaacacccacatctcctcat |
36651092 |
T |
|
| Q |
214 |
tggtaaagtgacaagaatcaacaacaatgctattcttcatcaagtagtccaccttatcaacaaagttcttgtatttaaccttcacacaagtgttatcatt |
313 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
36651093 |
tggtgaagtgacaagaatcaacaacaatgttattcttcatcaagtagtccaccttatcaccaaagttcttgtatttaaccttcacacaagtgatatcatt |
36651192 |
T |
|
| Q |
314 |
ggatccacactccaccacattagacacaaccgccaagctataactcataaccattagatatcccttgaggaacacatgttacatgtcagttttaacgagg |
413 |
Q |
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| T |
36651193 |
gcatccacactccaccacattagacgcaactgccaagctataactcataaccattagatatcccttgaggaacacatgtttcatgtcggttttaacgagg |
36651292 |
T |
|
| Q |
414 |
agacgctgatgtatgtaattcaattcagcctcatacaccccatttacactcatcaatttcttgtacagatattcaatggttttgcgtgacttcattccag |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36651293 |
agacgctgatgtatgtaattcaattcagcctcatacaccccatttacactcatcaatttcttgtacagatattcaatggtttcgcgtgacttcattccag |
36651392 |
T |
|
| Q |
514 |
accttgccacaattgcagatgtagtctctaactgaatggagcttttcatgagatagctttcggtcaaaatgaactcgtgactaagactttctttctcaag |
613 |
Q |
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| T |
36651393 |
atcttgccacaattgcagatgtagtctctaactgaatggagcttttcatgagatagctttcggtcaaaatgaactcgtgactaagactttctttctcaag |
36651492 |
T |
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| Q |
614 |
cggtttatctctctgct |
630 |
Q |
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|||||||||||| |||| |
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| T |
36651493 |
cggtttatctctgtgct |
36651509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 36642441 - 36642317
Alignment:
| Q |
114 |
tcatccttagccaatatcagactattataaatgttggcttcgccaaaacgcttttttggatactcatcacacatttcaaccaacacccacatctcctcat |
213 |
Q |
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|||||||||||||||| |||| | ||||||| |||||||| ||||||| ||| ||||||||||||| |||||||||||| || || | | |||||||||| |
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| T |
36642441 |
tcatccttagccaataccagattgttataaacgttggctttgccaaaatgctgttttggatactcaacacacatttcaatcagcagcgatatctcctcat |
36642342 |
T |
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| Q |
214 |
tggtaaagtgacaagaatcaacaac |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
36642341 |
gagtaaagtgacaagaatcaacaac |
36642317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 36642257 - 36642181
Alignment:
| Q |
352 |
tataactcataaccattagatatcccttgaggaacacatgttacatgtcagttttaacgaggagacgctgatgtatg |
428 |
Q |
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|||||||||||||||| |||||||| |||||||||||||| ||||| || | || |||||||||||| ||||||| |
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| T |
36642257 |
tataactcataaccatgagatatcctttgaggaacacatgcctcatgttaggtctagcgaggagacgctaatgtatg |
36642181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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