View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1329_low_21 (Length: 251)
Name: NF1329_low_21
Description: NF1329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1329_low_21 |
 | |
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| [»] chr3 (11 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 5502288 - 5502532
Alignment:
| Q |
7 |
tcgaagaatataccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaa |
106 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5502288 |
tcgaagactataccttgtacactgctccaaaaccaccttctcccaacttgcttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaa |
5502387 |
T |
|
| Q |
107 |
tattgttgccaaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| |
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|
| T |
5502388 |
tattgttgccaaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacagtttatgttgtttaatgttaa |
5502487 |
T |
|
| Q |
207 |
gaaagtaacagaacacatctatcaaactttagacttcattgtaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5502488 |
gaaagtaacagaacacatctatcaaactttagagttcattgtaat |
5502532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 5489439 - 5489683
Alignment:
| Q |
7 |
tcgaagaatataccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaa |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5489439 |
tcgaagactataccttgtacactgctccaaaaccaccttctcccaacttgtttctgatagagaaattatttgttgcattagtgatggttgaaaaatcaaa |
5489538 |
T |
|
| Q |
107 |
tattgttgccaaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaa |
206 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5489539 |
tattgttgcgaaatcaccatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggttgaatgttaa |
5489638 |
T |
|
| Q |
207 |
gaaagtaacagaacacatctatcaaactttagacttcattgtaat |
251 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
5489639 |
gaaagtaaaggaacacatcaatcaaacttcagagttcattgtaat |
5489683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 5454253 - 5454493
Alignment:
| Q |
10 |
aagaatataccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatat |
109 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| |||||||||||||| |
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|
| T |
5454253 |
aagactataccttgtacactggtccaaaaccaccttctcccaacttgtttctgacagagaagttatttgttgcattagtgatggtcgaaaaatcaaatat |
5454352 |
T |
|
| Q |
110 |
tgttgccaaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaa |
209 |
Q |
| |
|
||| ||||| |||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5454353 |
tgtagccaattcaccatcttccttctccttcttgtgcttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaa |
5454452 |
T |
|
| Q |
210 |
agtaacagaacacatctatcaaactttagacttcattgtaa |
250 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
5454453 |
agtaaaggaacacatcaatcaaacttcagagttcattgtaa |
5454493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 5445670 - 5445911
Alignment:
| Q |
10 |
aagaatataccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatat |
109 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| ||||||||||| || |
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|
| T |
5445670 |
aagactataccttgtacactggtccaaaaccaccttctcccaacttgtttctgacagagaagttatttgttgcattagtgatggtcgaaaaatcaaagat |
5445769 |
T |
|
| Q |
110 |
tgttgccaaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatg-ttaaga |
208 |
Q |
| |
|
||| ||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| | |
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|
| T |
5445770 |
tgtagccaattcaccatcttccttctccttcttgtgcttccagagaaataacttttttatatgccctgaagtaacaatttaagttgtttaatgtttaaaa |
5445869 |
T |
|
| Q |
209 |
aagtaacagaacacatctatcaaactttagacttcattgtaa |
250 |
Q |
| |
|
|||||| ||||||||| |||||||| ||| |||||||||| |
|
|
| T |
5445870 |
aagtaaaggaacacatcactcaaacttcagagttcattgtaa |
5445911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 20343003 - 20343179
Alignment:
| Q |
17 |
taccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgcc |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||| ||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
20343003 |
taccttgtacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggttgaaaaatcaaatattgtggcc |
20343102 |
T |
|
| Q |
117 |
aaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagt |
193 |
Q |
| |
|
|| ||| || ||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
20343103 |
aagtcatcatcttcattctccttcttctgcttccagtgaaataacttttttatatggcctgaagtaacaattaaagt |
20343179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 5849689 - 5849492
Alignment:
| Q |
17 |
taccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgcc |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||| ||||| |||||| | |||||||||| |||||||||| ||||||||||||||||| ||| |
|
|
| T |
5849689 |
taccttgtacactggtccaaaaccaccttctcctaacttatttttattagagaagtgatttgttgcattagtgatggtggaaaaatcaaatattgtagcc |
5849590 |
T |
|
| Q |
117 |
aaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaaagtaa |
214 |
Q |
| |
|
|| |||| || | ||||||| || || ||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
5849589 |
aagtcaccatctgccttctcttttttatgcttccgatgaaataacttttttatataacctgaagtaacaatttaagtggttcaatgttaacaaagtaa |
5849492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 5803262 - 5803066
Alignment:
| Q |
17 |
taccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgcc |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||| ||| | ||||||| |||||||||||| || ||||||| ||||||||||||||||||||| |
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|
| T |
5803262 |
taccttgtacactggtccaaaaccaccttctcctaacttatttgtatcagagaagttatttgttgcattattgatggtggaaaaatcaaatattgttgcc |
5803163 |
T |
|
| Q |
117 |
aaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaaagtaa |
214 |
Q |
| |
|
|| | || ||||||||||||| ||| |||||| | || ||||||||||||||||||| | || ||| |||||||||||||||||| ||||||| |
|
|
| T |
5803162 |
aagttggtatcttccttctccttcctgtccttccaacggaacaacttttttatataccctgga-caaaaatataagtggtttaatgttaacaaagtaa |
5803066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 5525162 - 5525344
Alignment:
| Q |
17 |
taccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgcc |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||| || |||||| | |||||||||| | |||||||| ||||||||||||||||||| | |
|
|
| T |
5525162 |
taccttgtacactggtccaaaaccaccttctcctaacttgtttctgttagagaagtgatttgttgcattggtgatggtcgaaaaatcaaatattgttgac |
5525261 |
T |
|
| Q |
117 |
aaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaaagtaa |
214 |
Q |
| |
|
|| |||| || | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
5525262 |
aagtcactatct------tccttcttgt---------gaaataactttttaatataccctgaagtaacaatttaagtggtttaatgtcaacaaagtaa |
5525344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 5484031 - 5484218
Alignment:
| Q |
17 |
taccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgcc |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| ||| | |||||| | |||||||||| | |||||||| |||||||||||||| || ||| |
|
|
| T |
5484031 |
taccttgtacacctgtccaaaaccaccttctcctaacttatttctattagagaagtgatttgttgcattggtgatggtggaaaaatcaaatatcgtagcc |
5484130 |
T |
|
| Q |
117 |
aaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaaagta |
213 |
Q |
| |
|
|| ||| || ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||| |
|
|
| T |
5484131 |
aagtcatcatcttccttctccttcttgt---------gaaataactttcttatataccctgaagtaataatttaagtggtttaatgtaaaaaaagta |
5484218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 5854857 - 5854755
Alignment:
| Q |
16 |
ataccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgc |
115 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||| ||||||| ||||| |||| |||||||| ||| |||||||||| |||||||||||||||||||| |
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|
| T |
5854857 |
ataccttgtataccggtccaaaaccaccttctcccagcttgtttctgacatagaagttatttgtcgcattagtgatggtcgaaaaatcaaatattgttgc |
5854758 |
T |
|
| Q |
116 |
caa |
118 |
Q |
| |
|
||| |
|
|
| T |
5854757 |
caa |
5854755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 5828938 - 5828781
Alignment:
| Q |
17 |
taccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgcc |
116 |
Q |
| |
|
||||||||| || | |||||| || |||||||| | ||||||||| ||| || | ||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
5828938 |
taccttgtataccggtccaaatccgccttctcctattttgtttttgttagaaaagtgatttgttgcgctagtgatgattgaaaaatcaaatattgttgcc |
5828839 |
T |
|
| Q |
117 |
aaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctg |
177 |
Q |
| |
|
|| ||| | || |||||||||||||| ||| | ||||||||| |||| |||||||||| |
|
|
| T |
5828838 |
aagtcaaca---tctttctccttcttgtgtttcgatagaaataacattttcatataccctg |
5828781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 25810142 - 25809901
Alignment:
| Q |
10 |
aagaatataccttgtacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatat |
109 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| ||||||||||| || |
|
|
| T |
25810142 |
aagactataccttgtacactggtccaaaaccaccttctcccaacttgtttctgacagagaagttatttgttgcattagtgatggtcgaaaaatcaaagat |
25810043 |
T |
|
| Q |
110 |
tgttgccaaatcacaatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatg-ttaaga |
208 |
Q |
| |
|
||| ||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| | |
|
|
| T |
25810042 |
tgtagccaattcaccatcttccttctccttcttgtgcttccagagaaataacttttttatatgccctgaagtaacaatttaagttgtttaatgtttaaaa |
25809943 |
T |
|
| Q |
209 |
aagtaacagaacacatctatcaaactttagacttcattgtaa |
250 |
Q |
| |
|
|||||| ||||||||| |||||||| ||| |||||||||| |
|
|
| T |
25809942 |
aagtaaaggaacacatcactcaaacttcagagttcattgtaa |
25809901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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