View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1329_low_23 (Length: 210)
Name: NF1329_low_23
Description: NF1329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1329_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 14960250 - 14960430
Alignment:
| Q |
17 |
ctttgtagctttattcagcatacttggtttatggttcattgttgttctgagagcaatcaattcatggtt--------cccaatcatgagtactgcagttg |
108 |
Q |
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| T |
14960250 |
ctttgtagctttattcagcatacttggtttatggttcattgttgttctgagagcaatcaattcatggttgaatggttcccaatcatgagtactgcagttg |
14960349 |
T |
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| Q |
109 |
gctaactaacttacttatggacatatttacttggtaacactatttgaagtttcttttttatgtaccatgaaaatgaacatgacct |
193 |
Q |
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| T |
14960350 |
gctaa----cttacttatggacatatttacttggtaacactatttgaagtttcttttttatgtaccatgaaaatgaacatgacct |
14960430 |
T |
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