View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1329_low_4 (Length: 430)

Name: NF1329_low_4
Description: NF1329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1329_low_4
NF1329_low_4
[»] chr7 (3 HSPs)
chr7 (1-400)||(39053935-39054335)
chr7 (141-181)||(17908163-17908203)
chr7 (259-291)||(35812443-35812475)
[»] chr8 (1 HSPs)
chr8 (135-180)||(35775653-35775698)
[»] chr3 (4 HSPs)
chr3 (258-293)||(49158654-49158689)
chr3 (259-293)||(30958172-30958206)
chr3 (259-293)||(30973984-30974018)
chr3 (260-316)||(27825272-27825328)
[»] chr5 (1 HSPs)
chr5 (138-204)||(29922603-29922669)
[»] chr4 (3 HSPs)
chr4 (259-293)||(38740290-38740324)
chr4 (181-217)||(7206307-7206343)
chr4 (259-291)||(48575519-48575551)
[»] chr2 (2 HSPs)
chr2 (259-293)||(7630540-7630574)
chr2 (259-293)||(13238937-13238971)
[»] chr1 (1 HSPs)
chr1 (181-217)||(3887472-3887508)


Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 39053935 - 39054335
Alignment:
Q  1 tcaaagattttaaattttagagactattttgaaatattaattatttaagcgagtgattaagttgttagtatcttacaatgtgacggattagtatgtttcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39053935 tcaaagattttaaattttagagactattttgaaatattaattatttaagcgagtgattaagttgtcagtatcttacaatgtgacggattagtatgtttcg 39054034  T
Q  101 tttcattttttatgagtcaaaattgtttctaggggtttagaattgattttgtctctggaattgattctaactcgaagctagtagcttttggcttctagaa 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39054035 tttcattttttatgagtcaaaattgtttctagaggtttagaattgattttgtctctagaattgattctaactcgaagctagtagcttttggcttctagaa 39054134  T
Q  201 ttgactttagccttaaagttaacgttcaatcttctttcatattaatgtatctaaatataaatcaattttac-aaaatgaattcattcaaaatcaggttgt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39054135 ttgactttagccttaaagttaacgttcaatcttctttcatattaatgtatctaaatataaatcaattttacaaaaatgaattcattcaaaatcaggttgt 39054234  T
Q  300 gtcactgcatagccaaatgcacactaaatttataacctctcttatttttcatacaatgaaatcattataattagggaaatatcactctttactcctacat 399  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39054235 gtcaccgcatagccaaatgcacactaaatttataacctctcttatttttcatacaatgaaatcattataattagggaaatatcactctttactcctgcat 39054334  T
Q  400 a 400  Q
    |    
T  39054335 a 39054335  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 17908163 - 17908203
Alignment:
Q  141 aattgattttgtctctggaattgattctaactcgaagctag 181  Q
    |||||||||||||||| ||||||||||||||  ||||||||    
T  17908163 aattgattttgtctctagaattgattctaacatgaagctag 17908203  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 35812443 - 35812475
Alignment:
Q  259 aaatcaattttacaaaatgaattcattcaaaat 291  Q
    |||||||||||||||||| ||||||||||||||    
T  35812443 aaatcaattttacaaaatcaattcattcaaaat 35812475  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 35775653 - 35775698
Alignment:
Q  135 gtttagaattgattttgtctctggaattgattctaactcgaagcta 180  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||||    
T  35775653 gtttagaattgaatttgtctctagaattgattctaacttgaagcta 35775698  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 293
Target Start/End: Original strand, 49158654 - 49158689
Alignment:
Q  258 taaatcaattttacaaaatgaattcattcaaaatca 293  Q
    ||||||||||||||||||| ||||||||||||||||    
T  49158654 taaatcaattttacaaaatcaattcattcaaaatca 49158689  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 30958172 - 30958206
Alignment:
Q  259 aaatcaattttacaaaatgaattcattcaaaatca 293  Q
    |||||||||||||||||| ||||||||||||||||    
T  30958172 aaatcaattttacaaaatcaattcattcaaaatca 30958206  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 30973984 - 30974018
Alignment:
Q  259 aaatcaattttacaaaatgaattcattcaaaatca 293  Q
    |||||||||||||||||| ||||||||||||||||    
T  30973984 aaatcaattttacaaaatcaattcattcaaaatca 30974018  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 27825328 - 27825272
Alignment:
Q  260 aatcaattttacaaaatgaattcattcaaaatcaggttgtgtcactgcatagccaaa 316  Q
    ||||||||||| ||||| ||||||||||||||||  |||||| || ||||| |||||    
T  27825328 aatcaattttataaaataaattcattcaaaatcaatttgtgttaccgcataaccaaa 27825272  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 29922603 - 29922669
Alignment:
Q  138 tagaattgattttgtctctggaattgattctaactcgaagctagtagcttttggcttctagaattga 204  Q
    |||||||||||||| |||  ||||||||| ||||| ||||| || | ||||||||||| ||||||||    
T  29922603 tagaattgattttgcctcaagaattgattttaacttgaagccagaatcttttggcttccagaattga 29922669  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 38740324 - 38740290
Alignment:
Q  259 aaatcaattttacaaaatgaattcattcaaaatca 293  Q
    |||||||||||||||||| ||||||||||||||||    
T  38740324 aaatcaattttacaaaatcaattcattcaaaatca 38740290  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 7206307 - 7206343
Alignment:
Q  181 gtagcttttggcttctagaattgactttagccttaaa 217  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  7206307 gtagcttttggcttctacaattgattttagccttaaa 7206343  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 48575519 - 48575551
Alignment:
Q  259 aaatcaattttacaaaatgaattcattcaaaat 291  Q
    |||||||||||||||||| ||||||||||||||    
T  48575519 aaatcaattttacaaaatcaattcattcaaaat 48575551  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 7630540 - 7630574
Alignment:
Q  259 aaatcaattttacaaaatgaattcattcaaaatca 293  Q
    |||||||||||||||||| ||||||||||||||||    
T  7630540 aaatcaattttacaaaatcaattcattcaaaatca 7630574  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 13238937 - 13238971
Alignment:
Q  259 aaatcaattttacaaaatgaattcattcaaaatca 293  Q
    ||||||||||||||||||||||||| |||||||||    
T  13238937 aaatcaattttacaaaatgaattcaatcaaaatca 13238971  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 3887508 - 3887472
Alignment:
Q  181 gtagcttttggcttctagaattgactttagccttaaa 217  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  3887508 gtagcttttggcttctacaattgattttagccttaaa 3887472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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