View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1329_low_5 (Length: 394)
Name: NF1329_low_5
Description: NF1329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1329_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 29 - 394
Target Start/End: Complemental strand, 11877951 - 11877588
Alignment:
| Q |
29 |
aaataatcattcgagtttttcttatcttgaaattttgttggaatgtgcttatattttacgaagatcaaatttgcatatcttgaaatatgcaaannnnnnn |
128 |
Q |
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| T |
11877951 |
aaataattattcgagtttttcttatcttgaaattttgttggaatgtgcttatattttacgaagatcaaatttgcatatcttgaaatatgcaaaatatata |
11877852 |
T |
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| Q |
129 |
nnnnntaacaccaggaaaagtgtttttccaaagagtctttttacgaactatgcttatattttgctcattggagaaatataaaatcaagttcttagattaa |
228 |
Q |
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| T |
11877851 |
tat--taacaccaggaaaagtgtttttccaaagagtctttttacgaactgtgcttatattttgctcattggagaaatataaaatcaagttcttagattaa |
11877754 |
T |
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| Q |
229 |
aaaattaacactagcgacatctaatgagtgtcttttattttgcactttattgcatttattgtaagataagattaacatactagagtaggatgacatgtaa |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11877753 |
aaaattaacactagcgacatctaatgagtgtcttttattttgcactttattgcatttattgtaagataagattaacatactagagtaggatgacatgtaa |
11877654 |
T |
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| Q |
329 |
aaattgtggaatctctaaaaagcaggaaaaatatattttgttctcccttctcttctttttatagcc |
394 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11877653 |
aaattgtggaatctctaaaaagcaggaaacatatattttgttctcccttctcttctttttatagcc |
11877588 |
T |
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