View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1329_low_6 (Length: 386)

Name: NF1329_low_6
Description: NF1329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1329_low_6
NF1329_low_6
[»] chr2 (1 HSPs)
chr2 (15-310)||(41359694-41359988)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 41359988 - 41359694
Alignment:
Q  15 gaggcttttaagaaagtgactctggacaattgttcagatgcttgtgattgtcttctaacagaattgaaaagaagtgtatccttccggtacaacttttctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41359988 gaggcttttaagaaagtgactctggacaattgttcagatgcttgtgattgtcttctaacagaattgaaaagaagtgtatccttccggtacaacttttctt 41359889  T
Q  115 aggatccttgctcttcttactgttcatcattcataggttctaagacacacttgatatttttgaatggtataatactcctacactcctaaatatacacaaa 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41359888 aggatccttgcccttcttactgttcatcattcataggttctaagacacacttgatatttttgaatggtataatactcctacacttctaaatatacacaaa 41359789  T
Q  215 aattcaaatgtatttgttcgaaannnnnnnnnnnnatttatatttcagatcaaagagaatacatctgattgaaaatgattctctagactaacttgt 310  Q
    |||||||||||||||||||||||            ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  41359788 aattcaaatgtatttgttcgaaa-tttgactttttatttatatttcagatcaaagagaatacatctcatggaaaatgattctctagactaacttgt 41359694  T

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