View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1329_low_7 (Length: 378)
Name: NF1329_low_7
Description: NF1329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1329_low_7 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 378
Target Start/End: Complemental strand, 39471518 - 39471144
Alignment:
| Q |
3 |
aacataaaattgcagtcaggaccatgtcaaaaatacaggtctacaaagctccaaaacagtccacatccatatatagtaaaaacaagtggtagcctgcact |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39471518 |
aacataaaattgcagtcaggaccatgtcaaaaatacaggtctacaaagctccaaaacagtccacatccatatatagtaaaaacaagtggtagcctgcact |
39471419 |
T |
|
| Q |
103 |
gcattgtcctttgaaatacgcatgccnnnnnnnnnnnnnnnnnnnntattattgaataataaataattccaacaagataataacaacaatctagttttac |
202 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39471418 |
gcattgtcctttgtcatacgcatgcccacacaccacacaccacacatattattgaataataaataattccaacaagataataacaacaatccagttttac |
39471319 |
T |
|
| Q |
203 |
annnnnnnnnnnnnnnnnncagatagtttttacatattcttgtacaccacaaaaacttgcacggtccatatataaggtagtagtaaatagccttcaccat |
302 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39471318 |
atttttttttcctttttt-cagatagtttttacatattcttgtacaccacaaaaacttgcacggtccatatataaggtagtagtaaatagccttcaccat |
39471220 |
T |
|
| Q |
303 |
ccatcaattctcccataaataatataaagacaaacatttcaatctcatgccataaagttctcatatcatgccatcc |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39471219 |
ccatcaattctcccataaataatataaagacaaacatttcaatctcatgccataaagttctcatatcatgccatcc |
39471144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 39465133 - 39465092
Alignment:
| Q |
31 |
aaaaatacaggtctacaaagctccaaaacagtccacatccat |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
39465133 |
aaaaatacaggtctacaaagctccaaaacagttcatatccat |
39465092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University