View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1329_low_8 (Length: 373)
Name: NF1329_low_8
Description: NF1329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1329_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 36 - 292
Target Start/End: Complemental strand, 45167914 - 45167658
Alignment:
| Q |
36 |
caaatatatacatgaattgtgcaaagtgtatatggaagatataaaatgaaggaataccatgtatcaatatattatcttttgcagttccattcaacaaaaa |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45167914 |
caaatatatacatgagttgtgcaaagtgtatatggaagatataaaatgaaggaataccatgtatcaatatattatcttttgcagttccattcaacaaaaa |
45167815 |
T |
|
| Q |
136 |
agaatgattgcacaccatgttaatttgaacatatagtcccgtcttcgatacctaccataacgttaacggtgtgtctaacgaaaaataaaacaaaagtgag |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45167814 |
agaatgattgcacaccatgttaatttgaacatatagtcccgtcttcgatacctaccataacgttaacggtgtgtctaacaaaaaataaaacaaaagtgag |
45167715 |
T |
|
| Q |
236 |
aaatttggatctagatatattttgtataannnnnnnacaaaaaactctacttcattc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45167714 |
aaatttggatctagatatattttgtataatttttttacaaaaaactctacttcattc |
45167658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14960426 - 14960386
Alignment:
| Q |
1 |
catgttcattttcatggtacataaaaaagaaacttcaaata |
41 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14960426 |
catgttcattttcatggtacataaaaaagaaacttcaaata |
14960386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University