View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13300_high_6 (Length: 275)
Name: NF13300_high_6
Description: NF13300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13300_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 2564880 - 2564634
Alignment:
| Q |
19 |
cttgcatcattaaattggtcattaaaatcagggcctccaacaatagcacccacatgaatattaggatttggattagaggaatagaaataatctgtgtaac |
118 |
Q |
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| T |
2564880 |
cttgcatcattaaattggtcattaaaatcagggcctccaactatagcacccacatgaatattaggatttggattagaggaatagaaataatctgtgtaac |
2564781 |
T |
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| Q |
119 |
catcattgcaacccactttggtctggtgaagtttgattgaagggatggaagaacctctgtgatgtaattgctttggatatttacttccatatcccaccat |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564780 |
catcattgcaacccactttggtctggtgaactttgattgaagggatggaagaacctctgtgatgtaattgctttggatatttacttccatatcccaccat |
2564681 |
T |
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| Q |
219 |
gtatgacatcttcatgggattgttacctagtatgtagtccacctatg |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564680 |
gtatgacatcttcatgggattgttacctagtatgtagtccacctatg |
2564634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 2574774 - 2574528
Alignment:
| Q |
19 |
cttgcatcattaaattggtcattaaaatcagggcctccaacaatagcacccacatgaatattaggatttggattagaggaatagaaataatctgtgtaac |
118 |
Q |
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||||||||||| ||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||| | | | | |
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| T |
2574774 |
cttgcatcattgtattggtcattagaatttggtcctccaacaatagcacccacatgaatattaggatttggattagatgatgagaaatagttcgattggc |
2574675 |
T |
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| Q |
119 |
catcattgcaacccactttggtctggtgaagtttgattgaagggatggaagaacctctgtgatgtaattgctttggatatttacttccatatcccaccat |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
2574674 |
catcattgcaacccactttggtctggtgaactttgattgaagggatggaagaacctctgtgatgtaattgttttggatatttactcccatatcccaccat |
2574575 |
T |
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| Q |
219 |
gtatgacatcttcatgggattgttacctagtatgtagtccacctatg |
265 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2574574 |
atatgacatcttcatgggattgtttcctagtatgtagtccacctatg |
2574528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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