View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13300_low_1 (Length: 930)

Name: NF13300_low_1
Description: NF13300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13300_low_1
NF13300_low_1
[»] chr3 (6 HSPs)
chr3 (6-912)||(39962363-39963264)
chr3 (701-822)||(37772619-37772740)
chr3 (727-822)||(37772761-37772857)
chr3 (702-768)||(39789518-39789584)
chr3 (713-773)||(50084754-50084814)
chr3 (707-760)||(6720487-6720540)
[»] chr7 (8 HSPs)
chr7 (697-806)||(30187454-30187563)
chr7 (698-909)||(39681759-39681982)
chr7 (703-761)||(48996777-48996835)
chr7 (702-801)||(39681959-39682058)
chr7 (704-761)||(48411256-48411313)
chr7 (704-822)||(24370518-24370630)
chr7 (702-761)||(28021544-28021602)
chr7 (703-757)||(28299107-28299161)
[»] chr8 (5 HSPs)
chr8 (708-820)||(40688098-40688209)
chr8 (702-796)||(40641130-40641224)
chr8 (704-811)||(31344415-31344520)
chr8 (732-822)||(13809494-13809586)
chr8 (705-801)||(44651520-44651617)
[»] chr1 (14 HSPs)
chr1 (703-773)||(11229081-11229151)
chr1 (702-773)||(31686687-31686758)
chr1 (700-761)||(468207-468269)
chr1 (701-750)||(33763692-33763741)
chr1 (709-773)||(38941155-38941219)
chr1 (716-771)||(34993667-34993722)
chr1 (699-761)||(25631511-25631573)
chr1 (705-822)||(1584920-1585035)
chr1 (703-767)||(11229321-11229386)
chr1 (710-757)||(25102116-25102166)
chr1 (828-872)||(31633135-31633179)
chr1 (716-760)||(34987188-34987232)
chr1 (700-798)||(27202515-27202611)
chr1 (711-773)||(25101900-25101962)
[»] chr5 (11 HSPs)
chr5 (701-800)||(27803033-27803132)
chr5 (700-763)||(8483865-8483928)
chr5 (701-759)||(20497230-20497289)
chr5 (702-761)||(41978345-41978404)
chr5 (702-760)||(3719105-3719163)
chr5 (702-744)||(16585346-16585388)
chr5 (708-818)||(39055535-39055646)
chr5 (714-802)||(13447910-13447998)
chr5 (703-774)||(16585110-16585181)
chr5 (702-760)||(5324505-5324563)
chr5 (702-771)||(16850960-16851029)
[»] chr2 (8 HSPs)
chr2 (702-773)||(9163983-9164054)
chr2 (701-750)||(7997761-7997810)
chr2 (743-808)||(41130170-41130235)
chr2 (701-772)||(2511135-2511206)
chr2 (703-760)||(9151165-9151220)
chr2 (700-757)||(12942410-12942467)
chr2 (753-822)||(35943277-35943346)
chr2 (828-909)||(41130315-41130396)
[»] chr4 (2 HSPs)
chr4 (703-819)||(14467021-14467131)
chr4 (714-822)||(56568402-56568510)
[»] chr6 (1 HSPs)
chr6 (710-760)||(24985403-24985453)


Alignment Details
Target: chr3 (Bit Score: 825; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 825; E-Value: 0
Query Start/End: Original strand, 6 - 912
Target Start/End: Original strand, 39962363 - 39963264
Alignment:
Q  6 atggacatcatcaagaggggcaaaccgaaaccgggtgcatcttgattgcagtgctgggataatcttgtttacatgattacagataagtgcaaaccgagtg 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39962363 atggacagcatcaagaggggcaaaccgaaaccgggtgcatcttgattgcagtgctgggataatcttgtttacatgattacagataagtgcaaaccgagtg 39962462  T
Q  106 ctctttgtatatttctcgatgactgtatcaaaagaatatgaagagtgttatagatcaagaaactggattgatgctatatacgtaagttagatcaaagtat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39962463 ctctttgtatatttctcgatgactgtatcaaaagaatatgaagagtgttataggtcaagaaactggattgatgctatatacgtaagttagatcaaagtat 39962562  T
Q  206 aaaatttggtgcacacctctacgtaatgcaaattgggcatccttagtcatggcatctgcttcatctaacaagaccagttttacagagggcttgacgctac 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39962563 aaaatttggtgcacacctctacgtaatgcaaattgggcatccttagtcatggcatctgcttcatctaacaagaccagttttacagagggcttgacgctaa 39962662  T
Q  306 acaacnnnnnnnnn--gttagaaaagttaaggttgcaattacagtacacttgcaaaaacaacagaaatccaaaattctggtttcacttttatcatgtagc 403  Q
    |||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39962663 acaacaaaaaaatatagttagaaaagttaaggttgcaattacagtacacttgcaaaaacaacagaaatccaaaattctggtttcacttttatcatgtagc 39962762  T
Q  404 ttcccaatcaaaagcacatgcaagcagaaagggaacaaaacaacaataaatagcaacacctttaaaaataaaaaccatcatctgaaaattgacatggaca 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39962763 ttcccaatcaaaagcacatgcaagcagaaagggaacaaaacaacaataaatagcaacgcctttaaaaataaaaaccatcatctgaaaattgacatggaca 39962862  T
Q  504 tgaggaatcatataactatccttgtatcatctttaatgtttaagtgttgttatcagcttaaaggggagaaatagtttacaatataaatgcccgaattatc 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39962863 tgaggaatcatataactatccttgtatcatctttaatgtttaagtgttgttatcagcttaaaggggagaaatagtttacaatataaatgcccgaattatc 39962962  T
Q  604 cggtattcagaaagaagatagatatagaacccccacattgactgatggactgatatagaaaataaagaacaggctaattactgctgaactccagccctgt 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39962963 cggtattcagaaagaagatagatatagaacccccacattgactgatggactgatatagaaaataaagaacaggctaattactgctgaactccagccctgt 39963062  T
Q  704 ttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtgtg 803  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  39963063 ttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgcta-------taaatgaacaattgtgtg 39963155  T
Q  804 catattttggaaacaatgattcattattttcgttattttcaaaaatgattcatccctaactaacattttatcttctctccaccagaatggttcatttgaa 903  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39963156 catattttggaaacaatgattcattattttcgttattttcaaaaatgattcatccctaactaacattttatcttctctccaccagaatggttcatttgaa 39963255  T
Q  904 gagtctagt 912  Q
    |||||||||    
T  39963256 gagtctagt 39963264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 701 - 822
Target Start/End: Original strand, 37772619 - 37772740
Alignment:
Q  701 tgtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgt 800  Q
    ||||||||||||||  ||||||| | |||| ||||||| |||||||||||| ||||||||||| |||||||| | |||||||| | || || ||||||||    
T  37772619 tgtttactttgtgattacattttctgttttcatttcctgaaatttgtgttaattttacttgctaacaaggagttactagactcatgaagtgtacaattgt 37772718  T
Q  801 gtgcatattttggaaacaatga 822  Q
       ||  |||||||||||||||    
T  37772719 tctcactttttggaaacaatga 37772740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 727 - 822
Target Start/End: Complemental strand, 37772857 - 37772761
Alignment:
Q  727 ttttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtgtgca-tattttggaaacaatga 822  Q
    |||| |||||||||||||||||||| |||||||| || |||| ||||| |||||  ||| || |||||||||||||||| | |||||||||||||||    
T  37772857 tttttatttcctaaaatttgtgttaattttacttactaacaatgagatactagatgcttgaagtgaacaattgtgtgcatttttttggaaacaatga 37772761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 702 - 768
Target Start/End: Complemental strand, 39789584 - 39789518
Alignment:
Q  702 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaa 768  Q
    |||||||||||||||| ||||| |||||| ||| |||||||||||||||| ||||||| ||| ||||    
T  39789584 gtttactttgtgaaaatattttctattttcattgcctaaaatttgtgttaattttactcgctaacaa 39789518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 773
Target Start/End: Original strand, 50084754 - 50084814
Alignment:
Q  713 gaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggaga 773  Q
    ||||||||||| |||||  |||||||||||||||| ||| ||||||||| | |||||||||    
T  50084754 gaaaacattttctatttctatttcctaaaatttgtattaattttacttgttaacaaggaga 50084814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 707 - 760
Target Start/End: Complemental strand, 6720540 - 6720487
Alignment:
Q  707 ctttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttactt 760  Q
    |||||| |||||||||| |||||| || | ||||||||||||||| ||||||||    
T  6720540 ctttgtaaaaacattttatattttcatattctaaaatttgtgttaattttactt 6720487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 697 - 806
Target Start/End: Original strand, 30187454 - 30187563
Alignment:
Q  697 gccctgtttactttgtgaaaacattttt-tattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaaca 795  Q
    |||| ||||||||||||||||||||||| |||||| |||| || |||||||||||||||||| ||||| | |||||||||||||||| || || ||||||    
T  30187454 gccccgtttactttgtgaaaacatttttctattttcattttctgaaatttgtgttagttttagttgctaa-aaggagatgctagacttttgaagtgaaca 30187552  T
Q  796 attgtgtgcat 806  Q
    |||||||||||    
T  30187553 attgtgtgcat 30187563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 698 - 909
Target Start/End: Original strand, 39681759 - 39681982
Alignment:
Q  698 ccctgtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatg---aac 794  Q
    |||| ||||||||||||||||||||| |||||| |||||  |||||||| | || ||||||||||| |||| ||||| |||||||||| || ||   ||     
T  39681759 ccctatttactttgtgaaaacattttctatttttatttctgaaaatttgagctaattttacttgctaacaaagagatactagactcttgaagtgaaaaat 39681858  T
Q  795 aattgtgtgcatattttggaaacaatg---attc------attattttcgttattttcaaaaatgattcatccctaactaacattttatcttctctccac 885  Q
    |||||||  ||| ||||  ||||||||   || |      | |||| || |||||||||||||||  |||||  |||||| ||||| ||||||||||||     
T  39681859 aattgtgcacatttttttaaaacaatgaaaatgccaaaagactattctcattattttcaaaaatgcatcatctataactagcatttcatcttctctccat 39681958  T
Q  886 cagaatggttcatttgaagagtct 909  Q
    || |||||||||||| ||||||||    
T  39681959 cacaatggttcattttaagagtct 39681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 703 - 761
Target Start/End: Original strand, 48996777 - 48996835
Alignment:
Q  703 tttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttg 761  Q
    |||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  48996777 tttactttatgaaaacattttctattttcatttcataaaatttgtgttagttttacttg 48996835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 702 - 801
Target Start/End: Complemental strand, 39682058 - 39681959
Alignment:
Q  702 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagtttta-cttgctgacaaggagatgctagactcttaaaatgaacaattgt 800  Q
    |||||||||||||||||||||||| |||| |||| ||||||| || |||  ||||| |||||| | ||| |||||| ||||||||||||||||| |||||    
T  39682058 gtttactttgtgaaaacatttttt-ttttcattttctaaaatatgagttcattttaacttgctaataagaagatgcgagactcttaaaatgaaccattgt 39681960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 704 - 761
Target Start/End: Original strand, 48411256 - 48411313
Alignment:
Q  704 ttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttg 761  Q
    |||||||||||||||||||| |||||| ||||  ||||||||| ||||||||||||||    
T  48411256 ttactttgtgaaaacattttctattttcattttttaaaatttgagttagttttacttg 48411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 704 - 822
Target Start/End: Complemental strand, 24370630 - 24370518
Alignment:
Q  704 ttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtgtg 803  Q
    ||||||||| |||||||||| |||||| ||||  || |||||||     |||||| | || |||| |||||  ||||||||| |||||||||| ||||||    
T  24370630 ttactttgt-aaaacattttctattttcattttttataatttgt-----ttttacctactaacaaagagataatagactcttgaaatgaacaactgtgtg 24370537  T
Q  804 catattttggaaacaatga 822  Q
    ||| |||||||||||||||    
T  24370536 cattttttggaaacaatga 24370518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 702 - 761
Target Start/End: Complemental strand, 28021602 - 28021544
Alignment:
Q  702 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttg 761  Q
    ||||||||| ||||||| ||||||| ||| ||||  ||||||||||||||||||||||||    
T  28021602 gtttactttatgaaaactttttttaatttcatttt-taaaatttgtgttagttttacttg 28021544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 703 - 757
Target Start/End: Original strand, 28299107 - 28299161
Alignment:
Q  703 tttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagtttta 757  Q
    ||||||||| ||||| |||||||||||| || || |||||||| |||||||||||    
T  28299107 tttactttgagaaaatattttttatttttatatcttaaaatttatgttagtttta 28299161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 708 - 820
Target Start/End: Original strand, 40688098 - 40688209
Alignment:
Q  708 tttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtgtgcata 807  Q
    |||||||||| ||||| |||||| |||  ||||||||| ||||| ||||||||| | |||| ||||| |||||||||| || ||||||||||||||||||    
T  40688098 tttgtgaaaatattttctattttcattcactaaaattt-tgttaattttacttggtaacaatgagatactagactcttgaagtgaacaattgtgtgcata 40688196  T
Q  808 ttttggaaacaat 820  Q
    |||||||||||||    
T  40688197 ttttggaaacaat 40688209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 702 - 796
Target Start/End: Complemental strand, 40641224 - 40641130
Alignment:
Q  702 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaa 796  Q
    ||||| |||| ||||||||||| |||||| |||| ||||||||||||||| ||||||||||| |||  ||||| |||||||||| ||||||||||    
T  40641224 gtttattttgcgaaaacattttctattttcattttctaaaatttgtgttaattttacttgctaacagagagatactagactcttgaaatgaacaa 40641130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 704 - 811
Target Start/End: Complemental strand, 31344520 - 31344415
Alignment:
Q  704 ttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtgtg 803  Q
    ||||||||||||| | ||||||||||| |||| ||||| ||||||||| |||||||| ||||||| |||||   |||||||| || |||||| |||||||    
T  31344520 ttactttgtgaaagcgttttttattttcattttctaaagtttgtgttaattttacttcctgacaaagagat--aagactcttgaagtgaacacttgtgtg 31344423  T
Q  804 catatttt 811  Q
    ||| ||||    
T  31344422 catttttt 31344415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 732 - 822
Target Start/End: Complemental strand, 13809586 - 13809494
Alignment:
Q  732 atttcctaaaatttgtgttagttttacttgctgacaaggagatg--ctagactcttaaaatgaacaattgtgtgcatattttggaaacaatga 822  Q
    |||| ||||||||||||||||||||||||||| | || ||||||   || |||||| || ||||||| ||||||| | |||||||||||||||    
T  13809586 attttctaaaatttgtgttagttttacttgctaataaagagatgatatatactcttgaagtgaacaactgtgtgccttttttggaaacaatga 13809494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 705 - 801
Target Start/End: Complemental strand, 44651617 - 44651520
Alignment:
Q  705 tactttgtgaaaacattttttattttgatttcctaaaatttgtg-ttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtg 801  Q
    ||||||||||||||||||| |||||| |||| ||||||| |||| | | ||| |||| || | ||| |||||| ||||||||||| ||||| ||||||    
T  44651617 tactttgtgaaaacattttatatttttattttctaaaatatgtgctcattttaactttctaataagaagatgcgagactcttaaagtgaaccattgtg 44651520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 703 - 773
Target Start/End: Original strand, 11229081 - 11229151
Alignment:
Q  703 tttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggaga 773  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| | |||||||||    
T  11229081 tttactttgtgaaaacattttctattttcatttcctaaaatttgtgttagttttatttgtttacaaggaga 11229151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 702 - 773
Target Start/End: Original strand, 31686687 - 31686758
Alignment:
Q  702 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggaga 773  Q
    |||||||||||||||||||||| ||||||  | ||| ||||||||||||||||||||||| | |||||||||    
T  31686687 gtttactttgtgaaaacattttctatttttttctcccaaaatttgtgttagttttacttgttaacaaggaga 31686758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 700 - 761
Target Start/End: Original strand, 468207 - 468269
Alignment:
Q  700 ctgtttactttgtgaaaa-cattttttattttgatttcctaaaatttgtgttagttttacttg 761  Q
    |||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||||| ||||    
T  468207 ctgtttactttgtgaaaaactttttttattttcatttcttaaaatttgtgttagttttgcttg 468269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 701 - 750
Target Start/End: Complemental strand, 33763741 - 33763692
Alignment:
Q  701 tgtttactttgtgaaaacattttttattttgatttcctaaaatttgtgtt 750  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  33763741 tgtttactttgtgaaaacattttctatttttatttcttaaaatttgtgtt 33763692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 773
Target Start/End: Original strand, 38941155 - 38941219
Alignment:
Q  709 ttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggaga 773  Q
    ||||||||||||||| |||||| |||||||||||| |||||||||||  |||| | |||||||||    
T  38941155 ttgtgaaaacattttctattttcatttcctaaaatatgtgttagtttaccttgttaacaaggaga 38941219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 716 - 771
Target Start/End: Complemental strand, 34993722 - 34993667
Alignment:
Q  716 aacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaagga 771  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||| | |||||||    
T  34993722 aacattttctattttcatttcctaaaatttgtgttggttttacttgttaacaagga 34993667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 699 - 761
Target Start/End: Original strand, 25631511 - 25631573
Alignment:
Q  699 cctgtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttg 761  Q
    |||||||||||||||||||| | || |||||| |||| ||||||||||| ||| |||||||||    
T  25631511 cctgtttactttgtgaaaacgtattatattttcattttctaaaatttgttttaattttacttg 25631573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 705 - 822
Target Start/End: Original strand, 1584920 - 1585035
Alignment:
Q  705 tactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtgtgc 804  Q
    ||||| ||||||||||||| ||| || | || || ||||||||||||||||||| || | ||||||||||   |||||||| || |||  |||||| |||    
T  1584920 tacttagtgaaaacattttctatattcactttcttaaatttgtgttagttttacatg-ttacaaggagataacagactcttgaagtgattaattgtatgc 1585018  T
Q  805 atattttggaaacaatga 822  Q
    || |||||||||||||||    
T  1585019 at-ttttggaaacaatga 1585035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 703 - 767
Target Start/End: Complemental strand, 11229386 - 11229321
Alignment:
Q  703 tttactttgtgaaaacatt-ttttattttgatttcctaaaatttgtgttagttttacttgctgaca 767  Q
    ||||||||||||||||||| |||| |||| |||||  ||||||||| ||||||||||||| |||||    
T  11229386 tttactttgtgaaaacattattttgttttcatttctcaaaatttgttttagttttacttgttgaca 11229321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 710 - 757
Target Start/End: Complemental strand, 25102166 - 25102116
Alignment:
Q  710 tgtgaaaacattttttattttgatttcc---taaaatttgtgttagtttta 757  Q
    ||||||||||||||||||||| ||||||   ||||||||||||||||||||    
T  25102166 tgtgaaaacattttttattttcatttcccaataaaatttgtgttagtttta 25102116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 828 - 872
Target Start/End: Complemental strand, 31633179 - 31633135
Alignment:
Q  828 tattttcgttattttcaaaaatgattcatccctaactaacatttt 872  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||    
T  31633179 tattttcattattttcaaacatgtttcatccctaactaacatttt 31633135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 716 - 760
Target Start/End: Complemental strand, 34987232 - 34987188
Alignment:
Q  716 aacattttttattttgatttcctaaaatttgtgttagttttactt 760  Q
    |||||||| |||||| |||||||||||||||||||| ||||||||    
T  34987232 aacattttctattttcatttcctaaaatttgtgttatttttactt 34987188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 798
Target Start/End: Complemental strand, 27202611 - 27202515
Alignment:
Q  700 ctgtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaatt 798  Q
    ||||||||||||||||  |||||  |||||| |||||||||||||| |||||||| || ||| | |||||||||    |||||||| || |||||||||    
T  27202611 ctgtttactttgtgaa--catttcctatttttatttcctaaaatttatgttagttataattgttaacaaggagaaaaaagactcttgaagtgaacaatt 27202515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 711 - 773
Target Start/End: Original strand, 25101900 - 25101962
Alignment:
Q  711 gtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggaga 773  Q
    |||| |||||||| |||||| ||||| |||||||||||| ||||||||||  | |||||||||    
T  25101900 gtgataacattttctattttcatttcttaaaatttgtgtaagttttacttcttaacaaggaga 25101962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 701 - 800
Target Start/End: Complemental strand, 27803132 - 27803033
Alignment:
Q  701 tgtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgt 800  Q
    |||||||||||| |||| ||||| |||||| ||||||||||| |||||||||||||||||| | |||||||||    |||||||| || |||||||||||    
T  27803132 tgtttactttgtaaaaatattttctattttcatttcctaaaacttgtgttagttttacttgttaacaaggagaaaagagactcttgaagtgaacaattgt 27803033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 700 - 763
Target Start/End: Original strand, 8483865 - 8483928
Alignment:
Q  700 ctgtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgct 763  Q
    |||||||||| ||||||||||||| |||||| |||| || |||||||||||| |||||||||||    
T  8483865 ctgtttacttcgtgaaaacattttctatttttattttcttaaatttgtgttaattttacttgct 8483928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 701 - 759
Target Start/End: Original strand, 20497230 - 20497289
Alignment:
Q  701 tgtttactttgtgaaaacattttttattttgatttcctaaaatttgtgtt-agttttact 759  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||    
T  20497230 tgtttactttgtgaaaatattttttattttgatttcttaaaagttgtgttaagttttact 20497289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 702 - 761
Target Start/End: Complemental strand, 41978404 - 41978345
Alignment:
Q  702 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttg 761  Q
    ||||||||||| |||||||||| |||||| |||||||||||||||||||  |||||||||    
T  41978404 gtttactttgttaaaacattttctattttcatttcctaaaatttgtgttgtttttacttg 41978345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 702 - 760
Target Start/End: Original strand, 3719105 - 3719163
Alignment:
Q  702 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttactt 760  Q
    ||||||||||||||| ||| || | |||| |||||||||||||||||||||||||||||    
T  3719105 gtttactttgtgaaatcatgttctgttttcatttcctaaaatttgtgttagttttactt 3719163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 702 - 744
Target Start/End: Complemental strand, 16585388 - 16585346
Alignment:
Q  702 gtttactttgtgaaaacattttttattttgatttcctaaaatt 744  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  16585388 gtttactttgtgaaaacattttttattttcatttcctaaaatt 16585346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 708 - 818
Target Start/End: Original strand, 39055535 - 39055646
Alignment:
Q  708 tttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagat-gctagactcttaaaatgaacaattgtgtgcat 806  Q
    ||||||||| |||||| |||||| ||||| |||||||||||||| ||||| ||| | ||||  |||| |  ||||| || |||||||||||||| |||||    
T  39055535 tttgtgaaagcattttctattttcatttcttaaaatttgtgttaattttaattgttaacaaaaagatagtaagacttttcaaatgaacaattgtttgcat 39055634  T
Q  807 attttggaaaca 818  Q
     ||||| |||||    
T  39055635 tttttgaaaaca 39055646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 714 - 802
Target Start/End: Complemental strand, 13447998 - 13447910
Alignment:
Q  714 aaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtgt 802  Q
    |||| |||||||||||| |||| ||||||||||||||||||||| ||| | ||||| | ||  || |||||| || | |||||||||||    
T  13447998 aaaatattttttatttttattttctaaaatttgtgttagttttatttggtaacaagaaaataataaactcttgaagtcaacaattgtgt 13447910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 774
Target Start/End: Original strand, 16585110 - 16585181
Alignment:
Q  703 tttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagat 774  Q
    |||||||||||||| |||| | |||||| ||||||||||| ||||| || ||||||||| | ||||| ||||    
T  16585110 tttactttgtgaaatcattctctattttcatttcctaaaacttgtgataattttacttgataacaagtagat 16585181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 702 - 760
Target Start/End: Original strand, 5324505 - 5324563
Alignment:
Q  702 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttactt 760  Q
    |||||||||| ||||||||||| |  ||| |||||||||||||| ||| ||||||||||    
T  5324505 gtttactttgggaaaacattttctcatttcatttcctaaaatttatgtcagttttactt 5324563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 702 - 771
Target Start/End: Complemental strand, 16851029 - 16850960
Alignment:
Q  702 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaagga 771  Q
    ||||||||||||||||| |||| |||||  ||||  |||||||||  ||||||||||||| | |||||||    
T  16851029 gtttactttgtgaaaactttttctatttccattttataaaatttgcattagttttacttgttaacaagga 16850960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 702 - 773
Target Start/End: Original strand, 9163983 - 9164054
Alignment:
Q  702 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggaga 773  Q
    |||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||  | |||||||||    
T  9163983 gtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggaga 9164054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 750
Target Start/End: Original strand, 7997761 - 7997810
Alignment:
Q  701 tgtttactttgtgaaaacattttttattttgatttcctaaaatttgtgtt 750  Q
    |||||||||||||||||||||||||| ||| ||||  |||||||||||||    
T  7997761 tgtttactttgtgaaaacattttttacttttattttttaaaatttgtgtt 7997810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 743 - 808
Target Start/End: Original strand, 41130170 - 41130235
Alignment:
Q  743 tttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtgtgcatat 808  Q
    ||||||||| ||||||||||| ||||  |||| |||||||||| ||  ||||||||||||||||||    
T  41130170 tttgtgttaattttacttgctaacaaaaagatactagactcttgaagcgaacaattgtgtgcatat 41130235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 701 - 772
Target Start/End: Original strand, 2511135 - 2511206
Alignment:
Q  701 tgtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggag 772  Q
    |||||||||| |||||||||||| | |||| |||| ||||| ||| ||||| ||||||||| | ||||||||    
T  2511135 tgtttactttatgaaaacattttctgttttcattttctaaattttttgttaattttacttgttaacaaggag 2511206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 703 - 760
Target Start/End: Original strand, 9151165 - 9151220
Alignment:
Q  703 tttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttactt 760  Q
    ||||||||||||||||||||| | || | |||||||||||||  ||||||||||||||    
T  9151165 tttactttgtgaaaacattttctgttatcatttcctaaaatt--tgttagttttactt 9151220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 700 - 757
Target Start/End: Original strand, 12942410 - 12942467
Alignment:
Q  700 ctgtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagtttta 757  Q
    ||||||||| | |||||||||||| |||||| ||||  |||||||||||||| |||||    
T  12942410 ctgtttactatatgaaaacattttctattttcatttattaaaatttgtgttaatttta 12942467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 822
Target Start/End: Complemental strand, 35943346 - 35943277
Alignment:
Q  753 ttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtgtgcatattttggaaacaatga 822  Q
    ||||||||||| ||||||| ||   |||||||| || ||||||||||||  ||| |||||||||||||||    
T  35943346 ttttacttgctaacaaggaaataagagactcttgaagtgaacaattgtgcacattttttggaaacaatga 35943277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 828 - 909
Target Start/End: Original strand, 41130315 - 41130396
Alignment:
Q  828 tattttcgttattttcaaaaatgattcatccctaactaacattttatcttctctccaccagaatggttcatttgaagagtct 909  Q
    ||||||| ||||||  |||||||  ||||| |||| || ||||| |||||||| ||| || |||||||||||| ||||||||    
T  41130315 tattttcattatttctaaaaatgcatcatctctaattagcatttcatcttctccccatcacaatggttcatttcaagagtct 41130396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 703 - 819
Target Start/End: Original strand, 14467021 - 14467131
Alignment:
Q  703 tttactttgtgaaaacatttttt-attttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtg 801  Q
    |||||||||||||  |||||||  ||||| |||||||||||||||||||| ||||||||||| | ||        ||||||||| || |||||||||| |    
T  14467021 tttactttgtgaattcatttttcgattttcatttcctaaaatttgtgttaattttacttgctaagaa-------atagactcttgaagtgaacaattgag 14467113  T
Q  802 tgcatattttggaaacaa 819  Q
    ||||| ||||||||||||    
T  14467114 tgcattttttggaaacaa 14467131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 714 - 822
Target Start/End: Complemental strand, 56568510 - 56568402
Alignment:
Q  714 aaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggagatgctagactcttaaaatgaacaattgtgtgcatattttgg 813  Q
    |||||||||  |||||| |||| |||| |||| ||||| ||||||||||| ||||| || |  |||||||||  | | ||||||||| ||||| ||||||    
T  56568510 aaaacatttcctattttcattttctaagatttatgttaattttacttgctaacaagaagttaatagactcttgcagttaacaattgtctgcattttttgg 56568411  T
Q  814 aaacaatga 822  Q
    |||| ||||    
T  56568410 aaactatga 56568402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 760
Target Start/End: Original strand, 24985403 - 24985453
Alignment:
Q  710 tgtgaaaacattttttattttgatttcctaaaatttgtgttagttttactt 760  Q
    ||||| ||||||| ||||||| |||||||||||||||| ||||||||||||    
T  24985403 tgtgacaacatttattattttcatttcctaaaatttgtattagttttactt 24985453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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