View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13300_low_12 (Length: 273)
Name: NF13300_low_12
Description: NF13300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13300_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 3377826 - 3378080
Alignment:
| Q |
1 |
taaagttgatgatctagtaacattattagggtcctgctaacgaaatgggtactatgtaacaaatgtatgcgtttatgatacgatccagtgtgtagtaaaa |
100 |
Q |
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| T |
3377826 |
taaagttgatgatctagtaacattattagggtcctgctaacgaaattggtactatgtaacaaatgtatgcgtttatgatacgatccagtgtgtagtaaaa |
3377925 |
T |
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| Q |
101 |
cgcaaactttgtggtaactaattctcagtgacaagtctatgcaattttcgttactctttccagtggattgatatgtatcaggtagtggtaagcagttttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3377926 |
cgcaaactttgtggtaactaattctcagtgacaagtctatgcaattttcgttactctttccagtggattgatatgtatcaggtagtggtaagcagttttc |
3378025 |
T |
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| Q |
201 |
tggcaaatgaacagtccgagcagaagctaagaacgcgggaaaatgaggtgacttc |
255 |
Q |
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| T |
3378026 |
tggcaaatgaacagtccgagcagaagctaagaacgcgggaaaatgaggtgacttc |
3378080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 3401829 - 3401999
Alignment:
| Q |
83 |
atccagtgtgtagtaaaacgcaaactttgtggtaactaattctcagtgacaagtctatgcaattttcgttactctttccagtggattgatatgtatcagg |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||| |
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| T |
3401829 |
atccagtgtgtagtaaaacgcaaactttgtggtaactaattctcagtgacaagtctatgcaattctcattactctttccaatggattgatatgtatcagg |
3401928 |
T |
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| Q |
183 |
tagtggtaagcagttttctggcaaatgaacagtccgagcagaagctaagaacgcgggaaaatgaggtgact |
253 |
Q |
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| T |
3401929 |
tagtggtaagcagttctctgggaaatgaacagtctgagcagatgctaaaaacacaggaaaatgaggtgact |
3401999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 255
Target Start/End: Original strand, 3373637 - 3373867
Alignment:
| Q |
31 |
gtcctgctaacgaaatgggtactatgtaacaaatgtatgcgtttatgatacgatccagtgtgtagtaaaacgcaaactttgtggtaactaattctcagtg |
130 |
Q |
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||||| |||| ||||| | |||||||||||||| || ||| | | ||||| ||||| |||||||||||||| | | ||||||||||| || | ||| ||| |
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| T |
3373637 |
gtccttctaaagaaattgctactatgtaacaaaggtgtgcatatctgatatgatccggtgtgtagtaaaacaccacctttgtggtaattagtactcggtg |
3373736 |
T |
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| Q |
131 |
------acaagtctatgcaattttcgttactctttccagtggattgatatgtatcaggtagtggtaagcagttttctggcaaatgaacagtccgagcaga |
224 |
Q |
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| T |
3373737 |
tcggtgacaagtttactgaattctcagtactctttccaatggattgatatgtatcaggtagtggtcggcagttttatggcaaatgaacagcatgagcaga |
3373836 |
T |
|
| Q |
225 |
agctaagaacgcgggaaaatgaggtgacttc |
255 |
Q |
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||||| ||||| | |||||||||| ||||| |
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| T |
3373837 |
agctagaaacgcagaaaaatgaggtaacttc |
3373867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 3403224 - 3403329
Alignment:
| Q |
108 |
tttgtggtaactaattctcagtgacaagtctatgcaattttcgttactctttccagtggattgatatgtatcaggtagtggtaagcagttttctggcaaa |
207 |
Q |
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|||||||||| || | || |||||||||| ||||||||| || | |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
3403224 |
tttgtggtaattagtactaagtgacaagtttatgcaattatcatcactctttccaatggattgatatgtatcaggtagtggtaggcagttttctgccaag |
3403323 |
T |
|
| Q |
208 |
tgaaca |
213 |
Q |
| |
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|||||| |
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|
| T |
3403324 |
tgaaca |
3403329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3401776 - 3401830
Alignment:
| Q |
1 |
taaagttgatgatctagtaacattattagggtcctgctaacgaaatgggtactat |
55 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |
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| T |
3401776 |
taaagttgatgatctagtaacattattagtgtcctgctaacgaaattgctactat |
3401830 |
T |
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