View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13300_low_15 (Length: 241)
Name: NF13300_low_15
Description: NF13300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13300_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 31 - 231
Target Start/End: Original strand, 1307354 - 1307555
Alignment:
| Q |
31 |
agtgtttaggtgaatagttgtagtagaaacacactgtttggtgttaatttgaatgtttatgaacttgatttcggtctagnnnnnnnnn-gtagtaatttt |
129 |
Q |
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| T |
1307354 |
agtgtttaggtgaatatttgtagtagaaacacactgtttggtgttaatttcaatgtttatgaacttgatttcggtctagttttttttttgtagtaatttt |
1307453 |
T |
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| Q |
130 |
tatagtgtgttgagttaaatatttagttataggttattttgtgcatagagtcataataattttgaatattaatggacttgattgaaatgtgtactgcctt |
229 |
Q |
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| T |
1307454 |
tatagtgtgttgagttaactatttagttataggttattttgtgcatagagtcataataattttgaatattaatggacttgattgaaatgtgtactgcctt |
1307553 |
T |
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| Q |
230 |
tg |
231 |
Q |
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|| |
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| T |
1307554 |
tg |
1307555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 1307287 - 1307321
Alignment:
| Q |
67 |
tttggtgttaatttgaatgtttatgaacttgattt |
101 |
Q |
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| T |
1307287 |
tttggtgttaatttgaacgtttatgaacttgattt |
1307321 |
T |
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