View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13300_low_2 (Length: 641)
Name: NF13300_low_2
Description: NF13300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13300_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 72 - 284
Target Start/End: Complemental strand, 54085233 - 54085019
Alignment:
| Q |
72 |
cttaattaagtaatactctttt--atatatctgaattcagccatgatacatcattacattgccatcatctacgactcaaaaaactaaagctatgccaaat |
169 |
Q |
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| T |
54085233 |
cttaattaagtaatactcttttttatatatctgaattcagccatgatacatcattacattgccatcatctacgactcaaaaaactaaagctatgccaaat |
54085134 |
T |
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| Q |
170 |
tacaagtagatattggaaatttggaatcataacaggaaaagactaaaacaaaggttgaattgaaacacaactgatttttattactaaaacacacatgatg |
269 |
Q |
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| T |
54085133 |
tacaagtagatattggaaatttggaatcataacaggaaaagactaaaacaaaggttgaattgaaacacaactgatttttattactaaaacacacatgatg |
54085034 |
T |
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| Q |
270 |
catggcatcaaccat |
284 |
Q |
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||||||||||||||| |
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| T |
54085033 |
catggcatcaaccat |
54085019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 270 - 465
Target Start/End: Complemental strand, 54084997 - 54084802
Alignment:
| Q |
270 |
catggcatcaaccatctaacatgttcattatttaggtacacaccagctactaatttattgcaccaaacagtctaagattttcttttatttaaatcaaccg |
369 |
Q |
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| T |
54084997 |
catggcatcaaccatctaacatgttcattatttaggtacacaccagctactaatttattgcaccaaacagtctaagattttcttttatttaaatcaaccg |
54084898 |
T |
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| Q |
370 |
tattatctatatatttgtcaatcaattcatgcttttccttaattaatcaccaccaccttcaccataaccagagccctgcccatagcctccaccacc |
465 |
Q |
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| T |
54084897 |
tattatctatatatttgtcaatcaattcatgcttttccttaattaatcaccaccaccttcaccataaccagagccctgcccatagcctccaccacc |
54084802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 458 - 622
Target Start/End: Complemental strand, 54081379 - 54081215
Alignment:
| Q |
458 |
ccaccaccgcgacttctaccaccggatcccgaaccagcccgagagcctgcatatgagcctgcttccgaccctgccccggaaccagacccggaactagaag |
557 |
Q |
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| T |
54081379 |
ccaccaccgcgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcttccgaccctgccccggaaccagacccagaactagaag |
54081280 |
T |
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| Q |
558 |
acgaagaggacgatgaacttgaggaagagctagaaccagaaccagagcctgcaccagctccggct |
622 |
Q |
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| T |
54081279 |
acgaagaggacgatgaacttgaggaagagctagaaccagaaccagagcctgcaccagctccggct |
54081215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 458 - 622
Target Start/End: Complemental strand, 54084782 - 54084618
Alignment:
| Q |
458 |
ccaccaccgcgacttctaccaccggatcccgaaccagcccgagagcctgcatatgagcctgcttccgaccctgccccggaaccagacccggaactagaag |
557 |
Q |
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| T |
54084782 |
ccaccactgcgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcctccgaccctgccccagaaccggaaccggaactagaag |
54084683 |
T |
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| Q |
558 |
acgaagaggacgatgaacttgaggaagagctagaaccagaaccagagcctgcaccagctccggct |
622 |
Q |
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| T |
54084682 |
atgaagatgatgatgaacttgaggaagaactagaaccagagccagagccagctcctgctccggct |
54084618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 93 - 302
Target Start/End: Complemental strand, 54081802 - 54081596
Alignment:
| Q |
93 |
tatatatctgaattcagccatgatacatcattacattgccatcatctacgactcaaaaaactaaagctatgccaaattacaagtagatattggaaatttg |
192 |
Q |
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| T |
54081802 |
tatatatctgaattcaaccatggtacaatacaacagtgccatcatctacaactcaaaaagttaaagctatgccaaattacaagtagatattggaaattt- |
54081704 |
T |
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| Q |
193 |
gaatcataacaggaaaagactaaaac-aaaggttg-aattgaaacacaactgatttttatt-actaaaacacacatgatgcatggcatcaaccatctaac |
289 |
Q |
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| T |
54081703 |
---tcataaca--agaagactaaaacaaaaggttgaaattgaaacacaactaatttttcttcactaaaacacacatgatgcatggaatcaaccatctaac |
54081609 |
T |
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| Q |
290 |
atgttcattattt |
302 |
Q |
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| T |
54081608 |
gtgttcattattt |
54081596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 438
Target Start/End: Complemental strand, 54081572 - 54081480
Alignment:
| Q |
346 |
attttcttttatttaaatcaaccgtattatctatatatttgtcaatcaattcatgcttttccttaattaatcaccaccaccttcaccataacc |
438 |
Q |
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| T |
54081572 |
attttcttttatttgtgtcaaccatattagttatttatatattagtcaattcatgcatttcctgaattaatcacccccaccttcaccataacc |
54081480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 465
Target Start/End: Complemental strand, 54081460 - 54081423
Alignment:
| Q |
428 |
tcaccataaccagagccctgcccatagcctccaccacc |
465 |
Q |
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| T |
54081460 |
tcaccataaccagagccctgcccagagcctccaccacc |
54081423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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