View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13300_low_3 (Length: 474)
Name: NF13300_low_3
Description: NF13300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13300_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 10 - 474
Target Start/End: Complemental strand, 51979365 - 51978904
Alignment:
| Q |
10 |
gacatcatcaaacctgaagattcacaaatctggtaattgggatcttttttgagagaatgcgaacatcatgctgaatgggctcataaattaacttccattt |
109 |
Q |
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| T |
51979365 |
gacatcatcaaacctgaagattcacaaatctggtaattgggatcttttttgagagaatgcgaacatcatgctgaatgggctcataaattaacttccattt |
51979266 |
T |
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| Q |
110 |
ccattcaggtgtcaaaggtttaaatacaagctttgcttgacattcattgatcggagcattgtagatctgcacacacaaaattgatctcctgaatatgtag |
209 |
Q |
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| T |
51979265 |
ccattcaggtgtcaaaggtttaaatacaagctttgcttgacattcattgatcggagcattgtagatctgcacacacaaaattgatctcctgaatatgtag |
51979166 |
T |
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| Q |
210 |
taatcatcatgtgaaaacaattgtctagaagaagnnnnnnnnctcacaacattaacctatttggatgtgaagacatccaaatatagaaatgcttaaattt |
309 |
Q |
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| T |
51979165 |
taatcatcatgtgaaaacaattgtctagaagaagaaaaaaaactcacaacattaacttatt---aactgaagacatccaaatatagaaatgcttaaattt |
51979069 |
T |
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| Q |
310 |
catagagcatcattccttttaattaagaattctcattgaaaattcttgtatccgtagaacagacgagtttaatcacatagacaggataaaaagacaacat |
409 |
Q |
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| T |
51979068 |
catagagcatcattccttttaattaagaattctcattgaaaattcttgtatccgtagaacagatgagtttaatcacatagacaggataaaaagacaacat |
51978969 |
T |
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| Q |
410 |
ctaaccataccaccgtagtgcgattagaacagaataatctcgtttatgcaccatgcatgatgaac |
474 |
Q |
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| T |
51978968 |
ctaaccataccaccgtagtgcgattagaacagaataatctcgtttatgcaccatgcatgatgaac |
51978904 |
T |
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