View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13300_low_4 (Length: 468)
Name: NF13300_low_4
Description: NF13300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13300_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 4499578 - 4499382
Alignment:
| Q |
1 |
tcttttatttcaaatctattgttgaaactgctctcaattgatgaaaaaatctgtaagaaacatgcataatcttatttccatgttagcaagttgtatnnnn |
100 |
Q |
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| T |
4499578 |
tcttttatttcaaatctattgttgaaactgctctaaattgatgaaaaaatctgtaagaaacatgcataatcttatttccatgttagcaagttgtataaaa |
4499479 |
T |
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| Q |
101 |
nnntcattaccatcccattaatttggtttttattttgaccaaaccaattatgaacagcaccccattttttcatcaccataacttgcaacataattgc |
197 |
Q |
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| T |
4499478 |
aaatcattaccatcccattaatttggtttttattttgaccaaaccaattatgaacagcaccccattttttcatcacaataacttgcaacataattgc |
4499382 |
T |
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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 13233555 - 13233719
Alignment:
| Q |
10 |
tcaaatctattgttgaaactgctctcaattgatgaaaaaatctgtaagaaacatgcataatcttatttc-----catgttagcaagttgtatnnnnnnnt |
104 |
Q |
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| T |
13233555 |
tcaaatctattgttgaaactgttttcaattgatgaaaaactcagcaaggaacctgcagaatcttatttccatgtcatgtgaacaagttgcat-aaaaaat |
13233653 |
T |
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| Q |
105 |
cattaccatcccattaatttggtttttattttgaccaaaccaattatgaacagcaccccatttttt |
170 |
Q |
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| T |
13233654 |
cattaccgtcccgtttatttggttttcgttttgactgaaccaattatgaacatcaccccatttttt |
13233719 |
T |
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