View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13300_low_5 (Length: 453)
Name: NF13300_low_5
Description: NF13300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13300_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 45 - 434
Target Start/End: Original strand, 49124572 - 49124965
Alignment:
| Q |
45 |
tgtaactgagtttagaatgttatgtaactgagagttgtaaaagtcttctaccatatatatata----aattagcatcaaatacaaaacattaccatgtaa |
140 |
Q |
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| T |
49124572 |
tgtaactgagtttagaatgttatgtaactgagagttgtaaaagtcttctaccatgtatatatataaaaattagcatcaaatacaaaacattaccatgtaa |
49124671 |
T |
|
| Q |
141 |
tagagcttccaaggatccattttgcattaactcatacacaataaatctcatgtctccattaatgctacaaccaagcaaagaaattatatttggatgctga |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
49124672 |
tagagcttccaaggatccattttgcattaactcatacacaataaatctcatgtctccattaatgctacaaccgagcaaagaaattatatttggatgctga |
49124771 |
T |
|
| Q |
241 |
attttactcaataaatccacctcattctgcaaattcatcccactattaaattcaatataagatataaatacnnnnnnngaagaaaagaaacaacaaatga |
340 |
Q |
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| T |
49124772 |
attttactcaataaatccacctcattctgcaaattcatcccactattaaattcaatataagatataaatactttttttgaagaaaagaaacaaaaaatga |
49124871 |
T |
|
| Q |
341 |
atggttacctcaaattctgtctcagcattttgtgtttggcagtgtagtttcttgacagcaacatccaaattatcatcaaattgtgccttgtaaa |
434 |
Q |
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| T |
49124872 |
atggttacctcaaattctgtctcagcattttgtgtttggcagtgtagtttcttgacagcaacatccaaattatcatcaaattgtgccttgtaaa |
49124965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 11683514 - 11683638
Alignment:
| Q |
166 |
attaactcatacacaataaatctcatgtctccattaatgctacaaccaagcaaagaaattatatttggatgctgaattttactcaataaatccacctcat |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11683514 |
attaactcatacacaataaatctcatgtctccattaatgctacaaccgagtaaagaaattatatttggatgctgaattttactcaataaatccacctcat |
11683613 |
T |
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| Q |
266 |
tctgcaaattcatcccactattaaa |
290 |
Q |
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||||||||||||||||||||||||| |
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| T |
11683614 |
tctgcaaattcatcccactattaaa |
11683638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 11683439 - 11683489
Alignment:
| Q |
45 |
tgtaactgagtttagaatgttatgtaactgagagttgtaaaagtcttctac |
95 |
Q |
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| T |
11683439 |
tgtaactgagtttagaatgttatttaactgagagttgtaaatgtcttctac |
11683489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 130 - 287
Target Start/End: Complemental strand, 4270936 - 4270779
Alignment:
| Q |
130 |
ttaccatgtaatagagcttccaaggatccattttgcattaactcatacacaataaatctcatgtctccattaatgctacaaccaagcaaagaaattatat |
229 |
Q |
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|||||||||||| ||| |||||| |||||||||||||| |||||||| |||||||| || || ||||| ||||||| || || | |||||||| || |
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| T |
4270936 |
ttaccatgtaattgagtttccaatgatccattttgcatcaactcatagacaataaaccttgaatcctcattactgctacagcccagtagagaaattacat |
4270837 |
T |
|
| Q |
230 |
ttggatgctgaattttactcaataaatccacctcattctgcaaattcatcccactatt |
287 |
Q |
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||||||| ||||||||||| || ||||||||||||||||| |||||||||| |||||| |
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| T |
4270836 |
ttggatgttgaattttacttaacaaatccacctcattctggaaattcatccaactatt |
4270779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 130 - 287
Target Start/End: Complemental strand, 2807280 - 2807123
Alignment:
| Q |
130 |
ttaccatgtaatagagcttccaaggatccattttgcattaactcatacacaataaatctcatgtctccattaatgctacaaccaagcaaagaaattatat |
229 |
Q |
| |
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|||||||||||| ||| |||||| |||||||||||||| |||||||| |||||||| || || ||||| ||||||| || || | |||||||| || |
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| T |
2807280 |
ttaccatgtaattgagtttccaatgatccattttgcatcaactcatagacaataaaccttgaatcctcattactgctacagcccagtagagaaattacat |
2807181 |
T |
|
| Q |
230 |
ttggatgctgaattttactcaataaatccacctcattctgcaaattcatcccactatt |
287 |
Q |
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||||||| ||||||||||| || ||||||||||||||||| |||||||||| |||||| |
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| T |
2807180 |
ttggatgttgaattttacttaacaaatccacctcattctgtaaattcatccaactatt |
2807123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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