View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13300_low_6 (Length: 400)
Name: NF13300_low_6
Description: NF13300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13300_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 36673267 - 36672993
Alignment:
| Q |
18 |
attaaggggattagaatatgctacttcaattactatagacgaaattgttgagttttaaataataagatcaggtgtacacatccataggttttgttatatc |
117 |
Q |
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| T |
36673267 |
attaaggggattagaatatgctacttcaattactatagacgaaattgttgagttt-aaataataagatcaggtgtacgcatccataggttttgttatatc |
36673169 |
T |
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| Q |
118 |
ggagnnnnnnntaatgttacgactctctgtatcattgtaataaaaagttgtattgctctcctgaaaataataaaaagttgaacagctatgcctatcagtg |
217 |
Q |
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| T |
36673168 |
ggagaaaaaaataatgttacgactctctgtatcattgtaataaaaagttgtattgctctcctgaaaa-aataaaaagttgaacagctatgcctatcagtg |
36673070 |
T |
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| Q |
218 |
tgttattgctcaaatatatgtataatatatctcccccacatgtattaagaaaatgaacctaaactctcctcattcca |
294 |
Q |
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| T |
36673069 |
tgttattgctcaaatatatgtataatatatctccccaacatgtattaagaaaatgaacctaaactctcctcattcca |
36672993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 36676023 - 36675954
Alignment:
| Q |
17 |
cattaaggggattagaatatgctacttcaattactatagacgaaattgttgagttttaaataataagatc |
86 |
Q |
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| T |
36676023 |
cattaaggggattagaatatgcttcttctattcctatggacgaaattgtcgagttttaaataattagatc |
36675954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 36675867 - 36675810
Alignment:
| Q |
218 |
tgttattgctcaaatatatgtataatatatctcccccacatgtattaagaaaatgaac |
275 |
Q |
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| T |
36675867 |
tgttattggtcaaatatatgtataatatgtctcccccacatatattaaaaaattgaac |
36675810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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