View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13300_low_8 (Length: 355)
Name: NF13300_low_8
Description: NF13300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13300_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 51383514 - 51383844
Alignment:
| Q |
9 |
gataagaagtattgagatagaggaagtaaaaaatgctaaggcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattg |
108 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51383514 |
gataagaagtattgagatagaggaagtgaaaaatgctaagtcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattg |
51383613 |
T |
|
| Q |
109 |
ttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51383614 |
ttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgc |
51383713 |
T |
|
| Q |
209 |
caggacctatagacacttggaatgagannnnnnnggagatcatgaagaaggggaagaaccacccacataagtgagacatttctcagacgttaattctcac |
308 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51383714 |
caggacctatagacacttggaatgagatttttttggagatcatgaagaaggggaagaaccacccacataagtgagacatttctcagacgttaattctcat |
51383813 |
T |
|
| Q |
309 |
cgactaatgatttattatgtttacttttatt |
339 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
51383814 |
cgactaatgatttattatgtttacttttatt |
51383844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 15284329 - 15284555
Alignment:
| Q |
9 |
gataagaagtattgagatagaggaagtaaaaaatgctaaggcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattg |
108 |
Q |
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|||||||||| |||||||||||||||| ||||||||| |||||||||| ||||||| ||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
15284329 |
gataagaagtgttgagatagaggaagtggaaaatgctagggcaaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattg |
15284428 |
T |
|
| Q |
109 |
ttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgc |
208 |
Q |
| |
|
|||||||||||||||||||| || || || |||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
15284429 |
ttgagaccagatggtcatgctggtgcttatatgaatccttttccatttgcaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttgc |
15284528 |
T |
|
| Q |
209 |
caggacctatagacacttggaatgaga |
235 |
Q |
| |
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||||||||||||| ||||||||||||| |
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| T |
15284529 |
caggacctatagatacttggaatgaga |
15284555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 79 - 235
Target Start/End: Complemental strand, 15287516 - 15287360
Alignment:
| Q |
79 |
gaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatg |
178 |
Q |
| |
|
|||||| | ||| |||| ||||||||||| |||||||||||||||||| |||| | ||||||||||||||||||||||| |||||| ||||||| |||| |
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| T |
15287516 |
gaggtgttggatgtaactaaattggcattattgagaccagatggtcatccaggtccttacatgaatccttttccatttgcaaatggagttccaaaatatg |
15287417 |
T |
|
| Q |
179 |
tacaaaatgattgtgttcattggtgtttgccaggacctatagacacttggaatgaga |
235 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
15287416 |
tacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
15287360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 15262929 - 15263066
Alignment:
| Q |
98 |
aattggcattgttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || ||||||||||||||||| || || || || ||||||||||||| ||||||||||||||||| |
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| T |
15262929 |
aattggcattgttgagaccagatggtcatccaggtgcttacatgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttca |
15263028 |
T |
|
| Q |
198 |
ttggtgtttgccaggacctatagacacttggaatgaga |
235 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
15263029 |
ttggtgtttgcctggacctatagatacttggaatgaga |
15263066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 15256839 - 15256689
Alignment:
| Q |
85 |
cttgatataacaaaattggcattgttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaa |
184 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| |||| | || ||| | |||||||||||||| ||||| ||||| | ||| || | |
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|
| T |
15256839 |
cttgatgtaactaaattggcattgttgagaccagatggtcatccaggtccttatatgtacccttttccatttgccaatggtgttccagaacgtgtgcaga |
15256740 |
T |
|
| Q |
185 |
atgattgtgttcattggtgtttgccaggacctatagacacttggaatgaga |
235 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
15256739 |
atgattgtgttcattggtgtttgcctggacctatagacacatggaatgaga |
15256689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 92 - 235
Target Start/End: Complemental strand, 15265357 - 15265214
Alignment:
| Q |
92 |
taacaaaattggcattgttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattg |
191 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| |||| | || ||||||||||||||||| |||||| ||| | | |||| ||||||||||| |
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| T |
15265357 |
taacaaaattggctttgttaagaccagatggtcatccaggtccttatatgaatccttttccattctttaatggggttcaagaacatgtgcaaaatgattg |
15265258 |
T |
|
| Q |
192 |
tgttcattggtgtttgccaggacctatagacacttggaatgaga |
235 |
Q |
| |
|
|||||||||||||||||| ||||| || || || |||||||||| |
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| T |
15265257 |
tgttcattggtgtttgcctggaccaattgatacatggaatgaga |
15265214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 44248231 - 44248005
Alignment:
| Q |
9 |
gataagaagtattgagatagaggaagtaaaaaatgctaaggcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| | ||||||| ||||| | ||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
44248231 |
gataagaagtattgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcatta |
44248132 |
T |
|
| Q |
109 |
ttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgc |
208 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
44248131 |
ttgagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgc |
44248032 |
T |
|
| Q |
209 |
caggacctatagacacttggaatgaga |
235 |
Q |
| |
|
||||||||||||| | ||||||||||| |
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|
| T |
44248031 |
caggacctatagatatttggaatgaga |
44248005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 11807149 - 11806891
Alignment:
| Q |
9 |
gataagaagtattgagatagaggaagtaaaaaatgctaaggcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattg |
108 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||| |||| || ||||| | ||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
11807149 |
gataagaagtatggagatagaggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggtgcttgatataacaaaattggcattg |
11807050 |
T |
|
| Q |
109 |
ttgagaccagatggtcatgcaggagcctacatgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgc |
208 |
Q |
| |
|
|||||||||||||||||||||||||| || | | ||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||| |||| |
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|
| T |
11807049 |
ttgagaccagatggtcatgcaggagcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaaaacgattgtactcattggtgcttgc |
11806950 |
T |
|
| Q |
209 |
caggacctatagacacttggaatgagannnnnnnggagatcatgaagaaggggaagaac |
267 |
Q |
| |
|
|||||||||| || ||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
11806949 |
caggacctattgatacttggaatgagatttttttggagatgatgaagaaggggaagaac |
11806891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 6554224 - 6554187
Alignment:
| Q |
184 |
aatgattgtgttcattggtgtttgccaggacctataga |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6554224 |
aatgattgtgttcattggtgtttgccagggcctataga |
6554187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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