View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13300_low_9 (Length: 341)
Name: NF13300_low_9
Description: NF13300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13300_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 353468 - 353158
Alignment:
| Q |
18 |
aatgggtgataatatgtctgaatatcaggcttacatagacctgatttttccatctccttcagtatgtcaaaagctctctctttttgtgcatagtaacaaa |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
353468 |
aatgggtgataataagtctgaatatcaggcttacatagacctgatttttccatctccttcagtatgtcaaaagctctctctttttgtgcatagtaacaaa |
353369 |
T |
|
| Q |
118 |
acatagaaatcattgagttataggtcgatgtatttggggccacactggccttcggcatcgcaaccttgaatatatgtgtagcatcatctattctgcctgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
353368 |
acatagaaatcattgagttataggtcgatgtatttggggccacactggccttcggcatcgcaaccttgaatatatgtgtagcatcatctattctgcctgc |
353269 |
T |
|
| Q |
218 |
tctccccatcgtataaatgaacgaattgnnnnnnngtgtatcaggtctacacccaacagcattcattctttcgacaatttgtaaagcttcgtcaaatttc |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
353268 |
tctccccatcgtataaatgaacgaattgaaaaaaagtgtatcaggtctacacccaacagcattcattctttcgacaacttgtaaagcttcatcaaatttc |
353169 |
T |
|
| Q |
318 |
tctgcctttgc |
328 |
Q |
| |
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||||||||||| |
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| T |
353168 |
tctgcctttgc |
353158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 33 - 328
Target Start/End: Complemental strand, 10580233 - 10579938
Alignment:
| Q |
33 |
gtctgaatatcaggcttacatagacctgatttttccatctccttcagtatgtcaaaagctctctctttttgtgcatagtaacaaaacatagaaatcattg |
132 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
10580233 |
gtctgaatatccggcttacaaagacctgatttttccatctccttcagtattccaaaagctctctcttcacgtgcatagtaacaaaacatagaaaccattg |
10580134 |
T |
|
| Q |
133 |
agttataggtcgatgtatttggggccacactggccttcggcatcgcaaccttgaatatatgtgtagcatcatctattctgcctgctctccccatcgtata |
232 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| |
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| T |
10580133 |
agttataggtcgatgtatttggggccacattggccttcggcatcgcaaccttgaatacatatgtagcatcatctattctgcctgctctccccaacgtata |
10580034 |
T |
|
| Q |
233 |
aatgaacgaattgnnnnnnngtgtatcaggtctacacccaacagcattcattctttcgacaatttgtaaagcttcgtcaaatttctctgcctttgc |
328 |
Q |
| |
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||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
10580033 |
aatgaacgaattgaaaaagagcgtatcaggcctacatccaacagcattcattctttcgacaacttgtaaagcttcgtcaaatttctctgcttttgc |
10579938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 24578652 - 24578345
Alignment:
| Q |
18 |
aatgggtgataatatgtctgaatatcaggcttacatagacctgatttttccatctccttcagtatgtcaaaagctctctctttttgtgcatagtaacaaa |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
24578652 |
aatgggtgataa---gtctgaatatcaggcttacaaagacctgatttttccatctccttcagtatgccaaaagctctctcttcttgtgcatagtaacaaa |
24578556 |
T |
|
| Q |
118 |
acatagaaatcattgagttataggtcgatgtatttggggccacactggccttcggcatcgcaaccttgaatatatgtgtagcatcatctattctgcctgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
24578555 |
acatagaaatcattgagttataggtcgatgtatttggggccacactggccttcggcatcgcaaccttgaatacatgtgtagcatcatctattctgcctgc |
24578456 |
T |
|
| Q |
218 |
tctccccatcgtataaatgaacgaattgnnnnnnngtgtatcaggtctacacccaacagcattcattctttcgacaatttgtaaagcttcgtcaaatttc |
317 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
24578455 |
tctccccaatgtataaatgagcgaattgaaaaagagtgtatcaggcctacatccaacagcattcattctttcgacaacttgtaaagcttcttcaaatttt |
24578356 |
T |
|
| Q |
318 |
tctgcctttgc |
328 |
Q |
| |
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||||| ||||| |
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|
| T |
24578355 |
tctgcttttgc |
24578345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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