View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13301_high_5 (Length: 469)
Name: NF13301_high_5
Description: NF13301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13301_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 46812839 - 46812402
Alignment:
| Q |
1 |
cttcaaaaccccaggcagaatacgtgtcatagagaacacttggtcacaaataaaaaacaccccagccttttatttgcactttctttata-tatactcttt |
99 |
Q |
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| T |
46812839 |
cttcaaaaccccagacagaatacgtgtcatagaaaacacttggtcacaaataaaaaacaccacagccttttatttgcacttt----atactatactctt- |
46812745 |
T |
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| Q |
100 |
atttatactatcttgtttccaccaacgacacgtgtttaactgtgcggtacttcacagtttaactatcttgtacgacatgtcgttttgtttgttcagaatt |
199 |
Q |
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| T |
46812744 |
atttatatt----tgtttccacaaacgacacgtgtttaactgtgcggtacttcacagtttaactatcttgtacgacatgtcgttttgtttgttcagaatt |
46812649 |
T |
|
| Q |
200 |
tcgtcaccttcgttctgaattgttacgtttctgaaaaacgaatcttcaatgaaatgaacttcgttattgctaaaaatccaattaatcttttcaattctca |
299 |
Q |
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| T |
46812648 |
tcgtcaccttcgttctgaattgttacgtttctgaagaactaatcttcaatgaaatgaacttcgttattgctaaaaatccaattaatcttttcaattctca |
46812549 |
T |
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| Q |
300 |
ttcaccttattttcacgatcgttttcgtaacccttcgtttcttcttcacaattcaatcacaaaatggacatgtggtactaatactctaacattaaaagct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46812548 |
ttcaccttattttcacgatcgttttcgtaacccttcgtttcttcttcacaattcaatcacaaaatggacatgtggtactaatactctaacattaaaagct |
46812449 |
T |
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| Q |
400 |
acttctgcatctacatcaactgtctatggtggttgggatgaactcgc |
446 |
Q |
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| T |
46812448 |
acttctgcatctacatcaactgtctatggtggttgggatgaactcgc |
46812402 |
T |
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