View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13301_high_6 (Length: 433)
Name: NF13301_high_6
Description: NF13301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13301_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 41389114 - 41389407
Alignment:
| Q |
19 |
gttttaccaattaccaattggtaatgttgaacagttgatcttgatctttaactataaatcaaagacatttcaatttatctacatgcttctccataatcat |
118 |
Q |
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| T |
41389114 |
gttttaccaattaccaattggtaatgttgaacagttgatcttgatctttaactataaatcaaagacatttcaatttatctacatgcttctccataatcat |
41389213 |
T |
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| Q |
119 |
aattgaagttgagtagggtgctatagttttataccaaaaaagaagaataaccacagtatatacttttcaagtaagttaaatcaggccctccattttttgt |
218 |
Q |
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| T |
41389214 |
aattgaagttgagtagggtgctatagttttataccaaaaaagaagaataaccacagtatatacttttcaagcaagttaaatcaggccctccattttttgt |
41389313 |
T |
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| Q |
219 |
cctaatacatgtccatgtattggattatatatgaaattcatcctcttgtacgttaaacaggttttctaaatttgatatttgatgcacaaatatg |
312 |
Q |
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| T |
41389314 |
ccaaatacatgtccatgtattggattatatatgaaattcatcctcttgtacgttaaacaggttttctaaatttgatatttgatgcacaaatatg |
41389407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 41389467 - 41389523
Alignment:
| Q |
372 |
aaaaatggactatgtataatgtagtagtactataaaactttcatcatgatgatgtcc |
428 |
Q |
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| T |
41389467 |
aaaaatggactatgtataatgtagtagtactataaaactttcatcatgatgaggtcc |
41389523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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