View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13301_low_10 (Length: 342)
Name: NF13301_low_10
Description: NF13301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13301_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 5332633 - 5332945
Alignment:
| Q |
18 |
atcaccctgttttaagagtataaaacttgatagaggtcatggaaagagatagaaattaaacaaactagaaaatgaaattggctaaagtgtgatcacaaag |
117 |
Q |
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| T |
5332633 |
atcaccctgttttaagagtataaaacttgatagaggtcatggaaagagatagaaattaaacaaactagaaaatgaaattggctaaagtgtgatcacaaag |
5332732 |
T |
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| Q |
118 |
tgattacatcgtgtgaggcctttattgtagtgttaatttaatagattcagatatataaagtcttttgatcttcacatttatattaatcaacaaaaatgca |
217 |
Q |
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| T |
5332733 |
tgattacatcgtgtgaggcctttattgtagtgttaatttaataaattcagatatattaagtcttttgatcttcacatttatattaatcaacaaaaatgca |
5332832 |
T |
|
| Q |
218 |
taaactaaagtactagtgttgtttaacaggtatttatatgatttcattgataagatggtttcaatgac-------ttgtcacatctagagaaagtgctaa |
310 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
5332833 |
taaactgaagtactagtgttgtttaacaggtatttatacgatttcattgataagatggtttcaatgacttgtcagttgtcacatctagagcaagtgctaa |
5332932 |
T |
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| Q |
311 |
catagcatggctc |
323 |
Q |
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||||||||||||| |
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| T |
5332933 |
catagcatggctc |
5332945 |
T |
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