View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13301_low_13 (Length: 306)
Name: NF13301_low_13
Description: NF13301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13301_low_13 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 8894928 - 8894632
Alignment:
| Q |
10 |
gacatcatcaccacgaaaatgtgctgtgattatcggcacctcgtattttttcaatgttgttttgtaacaaagactcaattgttgagtagggtctttaaca |
109 |
Q |
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| T |
8894928 |
gacatcagcaccacgaaaatgtgctgtgattatcggcacctcgtattttttcaatgttgttttgtaacaaagactcaattgttgagtagggtctttaaca |
8894829 |
T |
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| Q |
110 |
cgctttaacttaaccatagatattactgcagtttctaattgagaataaacatcatttggcaactgggttattgttgatcctgaatcaattacgacatttc |
209 |
Q |
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| T |
8894828 |
cgctttaacttaaccatagatattactgcagtttctaactgagaataaacatcatttggcaactgggttatcgttgatcctgaatcaattacggcattgc |
8894729 |
T |
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| Q |
210 |
cctcattatccggtattaacgatgaatgcttcaattttataatgtggtctccaacactaaatgcttccaaatttgtgaagtaactcccaacataaaa |
306 |
Q |
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| T |
8894728 |
cctcattatccggtattaatgatgaatccttcaattttataatgtggtctccaacactaaatgcttccaaatttgtgaagtaattcccaacataaaa |
8894632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 14785 - 15060
Alignment:
| Q |
18 |
caccacgaaaatgtgctgtgattatcggcacctcgtattttttcaatgttgttttgtaacaaagactcaattgttgagtagggtctttaacacgctttaa |
117 |
Q |
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||||||||||||| ||||| |||||||| |||| || | |||||||||||| |||||| |||||||||||||||||| |||| || |||||||||||||| |
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| T |
14785 |
caccacgaaaatgagctgttattatcggaaccttgtctattttcaatgttgatttgtagcaaagactcaattgttgattaggatccttaacacgctttaa |
14884 |
T |
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| Q |
118 |
cttaaccatagatattactgcagtttctaattgagaataaacatcatttggcaactgggttattgttgatcctgaatcaattacgacatttccctcatta |
217 |
Q |
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| T |
14885 |
cttaatcatagatgccactgtagattctaactgagaataaacatcttctggcaaaatagttaatgttgatccagaatcaattattgtatttccttcctta |
14984 |
T |
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| Q |
218 |
tccggtattaacgatgaatgcttcaattttataatgtggtctccaacactaaatgcttccaaatttgtgaagtaac |
293 |
Q |
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| T |
14985 |
tcaggtattaaggaggagtcattgaatttgataatgtggtctcccacgctaaatgcttctaaatttgtgaagtaac |
15060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 19573914 - 19573878
Alignment:
| Q |
244 |
ttttataatgtggtctccaacactaaatgcttccaaa |
280 |
Q |
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| T |
19573914 |
ttttataatgtgatctcccacactaaatgcttccaaa |
19573878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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