View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13301_low_14 (Length: 296)
Name: NF13301_low_14
Description: NF13301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13301_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 83 - 275
Target Start/End: Original strand, 28595675 - 28595868
Alignment:
| Q |
83 |
atgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaa-gtttggccaattcagaccttccaaaatttaca |
181 |
Q |
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| T |
28595675 |
atgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaaagtttggccaattcagaccttccaaaatttaca |
28595774 |
T |
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| Q |
182 |
gatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtgactttatctggtaagttcatcactaacccat |
275 |
Q |
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| T |
28595775 |
gatgatctaacaactctaatatcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactaacccat |
28595868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 82 - 275
Target Start/End: Original strand, 32493895 - 32494088
Alignment:
| Q |
82 |
gatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttaca |
181 |
Q |
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| T |
32493895 |
gatgcaggtgggtggtccgtcatggacggtaaaactcggaagaagagactccaccgttgctagcaaaagtcaggccaattcagaccttccaaaatttacg |
32493994 |
T |
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| Q |
182 |
gatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtgactttatctggtaagttcatcactaacccat |
275 |
Q |
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| T |
32493995 |
gatgatctaacaactcttatagcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactgacccat |
32494088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 28592311 - 28592181
Alignment:
| Q |
82 |
gatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttaca |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || || ||||||||||||||| | |||||||| |||||| |
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| T |
28592311 |
gatgcaggtgggtggtccatcatggacggtaaaacttggacggagagactctaccacagcaagcaaaagtttggccaatactgaccttccgttatttacg |
28592212 |
T |
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| Q |
182 |
gatgatctaacaactcttatatcccatttta |
212 |
Q |
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| T |
28592211 |
gacgatcttacaactcttatatctcatttta |
28592181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 28587203 - 28587083
Alignment:
| Q |
92 |
ggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttacagatgatctaa |
191 |
Q |
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||||| || |||||||| |||||||||||||||||||||||||| | || || ||||||||||||||| | |||||||| ||||||||| ||||| | |
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| T |
28587203 |
ggtggcccgtcatggacagtaaaacttggaagaagagactctacaacagcaagcaaaagtttggccaataccgaccttccgttatttacagacgatctta |
28587104 |
T |
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| Q |
192 |
caactcttatatcccatttta |
212 |
Q |
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| T |
28587103 |
caactcttatatctcatttta |
28587083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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