View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13301_low_2 (Length: 550)

Name: NF13301_low_2
Description: NF13301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13301_low_2
NF13301_low_2
[»] chr7 (5 HSPs)
chr7 (17-533)||(20707276-20707792)
chr7 (17-533)||(20875320-20875836)
chr7 (251-499)||(41594486-41594734)
chr7 (65-235)||(41595380-41595550)
chr7 (65-176)||(31420677-31420788)
[»] chr2 (4 HSPs)
chr2 (251-499)||(43523093-43523341)
chr2 (65-235)||(43523986-43524156)
chr2 (65-176)||(5087406-5087517)
chr2 (259-465)||(5086489-5086695)
[»] chr3 (5 HSPs)
chr3 (253-499)||(22511700-22511946)
chr3 (69-235)||(22510896-22511062)
chr3 (65-176)||(2735308-2735419)
chr3 (65-176)||(40924354-40924465)
chr3 (65-209)||(22127789-22127933)
[»] chr5 (6 HSPs)
chr5 (251-498)||(23123110-23123357)
chr5 (251-499)||(14007347-14007585)
chr5 (65-235)||(23122289-23122459)
chr5 (65-235)||(14008231-14008401)
chr5 (65-176)||(22271618-22271729)
chr5 (259-327)||(7348331-7348399)
[»] chr4 (2 HSPs)
chr4 (65-235)||(50413725-50413895)
chr4 (84-176)||(14798457-14798549)
[»] chr8 (1 HSPs)
chr8 (399-499)||(12869189-12869289)
[»] chr6 (1 HSPs)
chr6 (65-176)||(95980-96091)
[»] scaffold0005 (1 HSPs)
scaffold0005 (84-176)||(41179-41271)
[»] chr1 (1 HSPs)
chr1 (97-176)||(27132127-27132206)


Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 533
Target Start/End: Complemental strand, 20707792 - 20707276
Alignment:
Q  17 aaggcaagttgtaatatatgagcnnnnnnntgagtgt-gtatgcttagagacaatccttcataaacaatgcttgtaaattgttccattcttatttcatat 115  Q
    |||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  20707792 aaggcaagttgtaatatatgagcaaaaaaatgagtgtagtatgcttagagacaatccttcataaacaacgcttgtaaattgttccattcttctttcatat 20707693  T
Q  116 tgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagt 215  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  20707692 tgcttgcaccatcatacccttgatcgtgaaggttagacacttcaatgttatgtcaagaaagtacatcatacactggttccgtaagacttaaagatgtagt 20707593  T
Q  216 gtttgtaacatatctgatatnnnnnnntgcagcaccctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtctt 315  Q
    ||||||||||||||||||||       ||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20707592 gtttgtaacatatctgatattaaaaaatgcagcatccgttgaaggtaaatattctagccatgaaagaaatatgctaaaccaagtgtcttgaaaccgtctt 20707493  T
Q  316 ggatgtttctctccaccagacaaaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtg 415  Q
    |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||    
T  20707492 ggatgtttctctccaccagacaaaagatattcttctatacatatttaatatgaaccccaattcgaataagctcttcgtattttat-aacatgatttagtg 20707394  T
Q  416 gatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaag 515  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20707393 gatatgtccatatttgggaacgctttccaggatcacgttttaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaag 20707294  T
Q  516 ttgatgtgtaggagttat 533  Q
    |||||||||| |||||||    
T  20707293 ttgatgtgtaagagttat 20707276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 533
Target Start/End: Complemental strand, 20875836 - 20875320
Alignment:
Q  17 aaggcaagttgtaatatatgagcnnnnnnntgagtgt-gtatgcttagagacaatccttcataaacaatgcttgtaaattgttccattcttatttcatat 115  Q
    |||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  20875836 aaggcaagttgtaatatatgagcaaaaaaatgagtgtagtatgcttagagacaatccttcataaacaacgcttgtaaattgttccattcttctttcatat 20875737  T
Q  116 tgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagt 215  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  20875736 tgcttgcaccatcatacccttgatcgtgaaggttagacacttcaatgttatgtcaagaaagtacatcatacactggttccgtaagacttaaagatgtagt 20875637  T
Q  216 gtttgtaacatatctgatatnnnnnnntgcagcaccctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtctt 315  Q
    ||||||||||||||||||||       ||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20875636 gtttgtaacatatctgatattaaaaaatgcagcatccgttgaaggtaaatattctagccatgaaagaaatatgctaaaccaagtgtcttgaaaccgtctt 20875537  T
Q  316 ggatgtttctctccaccagacaaaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtg 415  Q
    |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||    
T  20875536 ggatgtttctctccaccagacaaaagatattcttctatacatatttaatatgaaccccaattcgaataagctcttcgtattttat-aacatgatttagtg 20875438  T
Q  416 gatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaag 515  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20875437 gatatgtccatatttgggaacgctttccaggatcacgttttaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaag 20875338  T
Q  516 ttgatgtgtaggagttat 533  Q
    |||||||||| |||||||    
T  20875337 ttgatgtgtaagagttat 20875320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 251 - 499
Target Start/End: Complemental strand, 41594734 - 41594486
Alignment:
Q  251 cctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttc 350  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||||||||| ||||||||||||||| |   ||  |||||||||||||||||||||    
T  41594734 cctttgaaggtgaatattctagccatgaatgaaataagctaaaccaagtgtctttaaaccgtcttggatgatctcctgtaccagacaaaggatattcttc 41594635  T
Q  351 tatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatca 450  Q
    || ||  | || ||||| ||||||||||| ||||||||||||||||| ||| || ||||||| |||| ||||||||||| ||||||||||||||||||||    
T  41594634 taaatggatttgatatggaccccaattcagataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgctttccaggatca 41594535  T
Q  451 cgttctaaagtattcacaaaataagcttggttatgcacttcttcaattc 499  Q
    |||||||||| ||||| ||||| | |   |||||||| |||||||||||    
T  41594534 cgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattc 41594486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 41595550 - 41595380
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    |||||||||||||||||||||||||||||  ||||||||||  | |||||||||||||||||||||||||||||||  |||||||||| || |||| |||    
T  41595550 gacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcatacccttgaccacgaaggttagaaacatcaaggtt 41595451  T
Q  165 atgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat 235  Q
    |||||||||||| | |||| |||||| |||| |||||||||||||||||||| | |||||| |||| ||||    
T  41595450 atgtcgagaaagtatatcacacactgcttccttaagacttaaagatgtagtgctggtaacacatctcatat 41595380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 31420788 - 31420677
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    ||||||| |||||||| | ||||||||||   |||||||||  | |||||||||| ||||| ||||||||||||||  ||| |||||| || |||| |||    
T  31420788 gacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggtt 31420689  T
Q  165 atgtcgagaaag 176  Q
    ||||||||||||    
T  31420688 atgtcgagaaag 31420677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 251 - 499
Target Start/End: Complemental strand, 43523341 - 43523093
Alignment:
Q  251 cctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttc 350  Q
    ||||||||||||||||||||||||||||| |||||  | |||||||||| |||| ||||||||||||||| |   ||  |||||||||||||||||||||    
T  43523341 cctttgaaggtgaatattctagccatgaatgaaataagttaaaccaagtatctttaaaccgtcttggatgatctcctgtaccagacaaaggatattcttc 43523242  T
Q  351 tatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatca 450  Q
    || ||  | || ||||| ||||||||||||||||||||||||||||| ||| || ||||||| |||| ||||||||||| ||||||||||||||||||||    
T  43523241 taaatggatttgatatggaccccaattcaaataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgctttccaggatca 43523142  T
Q  451 cgttctaaagtattcacaaaataagcttggttatgcacttcttcaattc 499  Q
    |||||||||| ||||| ||||| | |   |||||||| |||||||||||    
T  43523141 cgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattc 43523093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 43524156 - 43523986
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    |||||||||||||||||||||||||||||  ||||||||||  | |||||||||||||||||||||||||||||||  |||||||||| || |||| |||    
T  43524156 gacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcatacccttgaccacgaaggttagaaacatcaaggtt 43524057  T
Q  165 atgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat 235  Q
    |||||||||||| | |||| |||| | |||| |||||||||||||||||||| | |||||| |||| ||||    
T  43524056 atgtcgagaaagtatatcacacaccgcttccttaagacttaaagatgtagtgctggtaacacatctcatat 43523986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 5087517 - 5087406
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    ||||||| |||||||| | ||||||||||   |||||||||  | |||||||||| ||||||||||||||||||||  ||| |||||| || |||| |||    
T  5087517 gacaatctttcataaaaagtgcttgtaaacaattccattctcctctcatattgctagcaccatcatacccttgaccacgaatgttagaaacatcaaggtt 5087418  T
Q  165 atgtcgagaaag 176  Q
    ||||||||||||    
T  5087417 atgtcgagaaag 5087406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 465
Target Start/End: Complemental strand, 5086695 - 5086489
Alignment:
Q  259 ggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttctatatata 358  Q
    ||||||||||||||||||||| ||||   ||| |||||||||||||||||||| |||||||||||||   |||||||||| ||||| | |||||  |       
T  5086695 ggtgaatattctagccatgaaggaaacaagctgaaccaagtgtcttgaaaccgccttggatgtttctgctcaccagacaagggatagttttctaatttcg 5086596  T
Q  359 attaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaa 458  Q
     || ||| | |||||| || | ||| ||||||||||||  |||   |||||| |||||||||  ||| ||| |   ||||||| ||||||||||||||||    
T  5086595 tttgataaggaccccattttagatacgctcttcgtattgcatccttttgattcggtggatattgccaaattggaatacgcttttcaggatcacgttctaa 5086496  T
Q  459 agtattc 465  Q
    || ||||    
T  5086495 agaattc 5086489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 9e-56; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 253 - 499
Target Start/End: Original strand, 22511700 - 22511946
Alignment:
Q  253 tttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttcta 352  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||||||||| ||||||||||||||| | | ||  |||||||||| ||||||||||||    
T  22511700 tttgaaggtgaatattctagccatgaatgaaataagctaaaccaagtgtctttaaaccgtcttggatgatcccctttaccagacaaatgatattcttcta 22511799  T
Q  353 tatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatcacg 452  Q
     ||  | || ||||  ||||||||| | ||||||||||| ||||| ||| || ||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  22511800 aatggatttgatatagaccccaatttagataagctcttcatatttcatccacatgatttgctggaaatgtccatattggggaacgctttccaggatcacg 22511899  T
Q  453 ttctaaagtattcacaaaataagcttggttatgcacttcttcaattc 499  Q
    |||||||| ||||| ||||| | |   |||||||| |||||||||||    
T  22511900 ttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattc 22511946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 22510896 - 22511062
Alignment:
Q  69 atccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgt 168  Q
    |||||||||||||||||||||||||  ||||||||||  | |||||||||||||||||| |||||||||||| ||||||||||| || |||| |||||||    
T  22510896 atccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccattatacccttgaccatgaaggttagaaacatcaaggttatgt 22510995  T
Q  169 cgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat 235  Q
    |||||||| | |||| |||| | |||| |||||||||||||||||||| | |||||| |||| ||||    
T  22510996 cgagaaagtatatcacacaccgcttccttaagacttaaagatgtagtgctagtaacacatctcatat 22511062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 2735419 - 2735308
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    ||||||| |||||||| | ||||||||||   |||||||||  | |||||||||| ||||| ||||||||||||||  ||| |||||| || |||| |||    
T  2735419 gacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggtt 2735320  T
Q  165 atgtcgagaaag 176  Q
    ||||||||||||    
T  2735319 atgtcgagaaag 2735308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 40924465 - 40924354
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    ||||||| |||||||| | ||||||||||   |||||||||  | |||||||||| ||||| ||||||||||||||  ||| |||||| || |||| |||    
T  40924465 gacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggtt 40924366  T
Q  165 atgtcgagaaag 176  Q
    ||||||||||||    
T  40924365 atgtcgagaaag 40924354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 209
Target Start/End: Original strand, 22127789 - 22127933
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    ||||||| |||||||| | ||||||||||   |||||||||  | |||||||||| ||||| ||||||||||||||   || |||||| ||||||| |||    
T  22127789 gacaatctttcataaatagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacaaatgttagaaacgtcaaagtt 22127888  T
Q  165 atgtcgagaaaggacatcatacactggttccgtaagacttaaaga 209  Q
    ||||||| |||| | | || | |||| |||| ||||| |||||||    
T  22127889 atgtcgaaaaagtataccacatactgcttccttaagagttaaaga 22127933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 251 - 498
Target Start/End: Original strand, 23123110 - 23123357
Alignment:
Q  251 cctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttc 350  Q
    |||||||||||||||||||||||||||||  |||   ||||||||||||||||| ||||||||||||||| | | ||  ||||||| |||||||||||||    
T  23123110 cctttgaaggtgaatattctagccatgaataaaacaagctaaaccaagtgtctttaaaccgtcttggatgatcccctttaccagacgaaggatattcttc 23123209  T
Q  351 tatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatca 450  Q
    || ||  | || ||||| ||||||||||| ||||||||||||||||| ||| || ||||||| |||| ||||||||||| ||||||||||| || |||||    
T  23123210 taaatggatttgatatggaccccaattcagataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgcttttcaagatca 23123309  T
Q  451 cgttctaaagtattcacaaaataagcttggttatgcacttcttcaatt 498  Q
    |||||||||  ||||| ||||| | |   |||||||| ||||||||||    
T  23123310 cgttctaaataattcaaaaaatcacccgcgttatgcaattcttcaatt 23123357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 251 - 499
Target Start/End: Complemental strand, 14007585 - 14007347
Alignment:
Q  251 cctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttc 350  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||||||||| ||||||||||||||| |   ||  ||||||||||||||||||||     
T  14007585 cctttgaaggtgaatattctagccatgaatgaaataagctaaaccaagtgtctttaaaccgtcttggatgatctcctgtaccagacaaaggatattctt- 14007487  T
Q  351 tatatataattaatatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatca 450  Q
             || ||||| ||||||||| | ||||||||||||||||| ||| || ||||||| |||| ||||||||||| ||||||||||||||||||||    
T  14007486 ---------ttgatatggaccccaatttagataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgctttccaggatca 14007396  T
Q  451 cgttctaaagtattcacaaaataagcttggttatgcacttcttcaattc 499  Q
    |||||||||| ||||| ||||| | |   |||||||| |||||||||||    
T  14007395 cgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattc 14007347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 23122289 - 23122459
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    |||||||||||||||||||||||||||||  ||||||||||  | |||||||||||||||||||||||||||||||  |||||||||| || |||| |||    
T  23122289 gacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcatacccttgaccacgaaggttagaaacatcaaggtt 23122388  T
Q  165 atgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat 235  Q
    |||||||||||| | |||| |||||| |||| |||||||||||||||||||| | |||||| |||| ||||    
T  23122389 atgtcgagaaagtatatcacacactgcttccttaagacttaaagatgtagtgctagtaacacatctcatat 23122459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 14008401 - 14008231
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    |||||||||||||||||||||||||||||  ||||||||||  | |||||||||||||||||||||||| ||||||  |||||||||| || |||| |||    
T  14008401 gacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcataccattgaccacgaaggttagaaacatcaaggtt 14008302  T
Q  165 atgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat 235  Q
    |||||||||||| | |||| |||| | |||| |||||||||||||||||||| | |||||| |||| ||||    
T  14008301 atgtcgagaaagtatatcacacaccgcttccttaagacttaaagatgtagtgctggtaacacatctcatat 14008231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 22271618 - 22271729
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    ||||||| |||||||| | ||||||||||   |||||||||  | |||||||||| ||||| ||||||||||||||  ||| |||||| || |||| |||    
T  22271618 gacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggtt 22271717  T
Q  165 atgtcgagaaag 176  Q
    ||||||||||||    
T  22271718 atgtcgagaaag 22271729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 7348399 - 7348331
Alignment:
Q  259 ggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctct 327  Q
    |||||||||||||||||  || ||||  ||| ||||||||||| ||||||||  |||||||| ||||||    
T  7348399 ggtgaatattctagccacaaaggaaacatgccaaaccaagtgtgttgaaaccaccttggatgattctct 7348331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 50413895 - 50413725
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    |||||||||| ||||||||||||| | ||   |||||||||  | || ||||||||| | ||||| ||||||||||| ||||||||||||| |||| |||    
T  50413895 gacaatccttaataaacaatgcttattaaccattccattctcctctcgtattgcttgtatcatcacacccttgaccgcgaaggttagacacatcaaggtt 50413796  T
Q  165 atgtcgagaaaggacatcatacactggttccgtaagacttaaagatgtagtgtttgtaacatatctgatat 235  Q
    | |||||||||| | |||| |||||| |||| ||||| |||||||||||||||||||||||||||| ||||    
T  50413795 acgtcgagaaagcatatcacacactgcttccttaagagttaaagatgtagtgtttgtaacatatctcatat 50413725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 14798457 - 14798549
Alignment:
Q  84 tgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgtcgagaaag 176  Q
    ||||||||||   |||||||||  | |||||||||| ||||| ||||||||||||||  ||| |||||| || |||| |||||||||||||||    
T  14798457 tgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaag 14798549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 399 - 499
Target Start/End: Original strand, 12869189 - 12869289
Alignment:
Q  399 atcaacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaatt 498  Q
    |||||| ||||||| |||| |||||| |||| |||||||||||||||||||||||||||||| ||||| ||||| | |   |||||||| ||||||||||    
T  12869189 atcaacatgatttgctggaaatgtccgtattggggaacgctttccaggatcacgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaatt 12869288  T
Q  499 c 499  Q
    |    
T  12869289 c 12869289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 96091 - 95980
Alignment:
Q  65 gacaatccttcataaacaatgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgtt 164  Q
    ||||||| |||||||| | ||||||||||   |||||||||  | |||||||||| ||||| ||||||||||||||  ||| |||||| || |||| |||    
T  96091 gacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggtt 95992  T
Q  165 atgtcgagaaag 176  Q
    ||||||||||||    
T  95991 atgtcgagaaag 95980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 41271 - 41179
Alignment:
Q  84 tgcttgtaaattgttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgtcgagaaag 176  Q
    ||||||||||   |||||||||  | |||||||||| ||||| ||||||||||||||  ||| |||||| || |||| |||||||||||||||    
T  41271 tgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaag 41179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 27132206 - 27132127
Alignment:
Q  97 ttccattcttatttcatattgcttgcaccatcatacccttgaccgtgaaggttagacacgtcaatgttatgtcgagaaag 176  Q
    |||||||||  | |||||||||  ||||| ||||||||||||||  ||| |||||| || |||| |||||||||||||||    
T  27132206 ttccattctcctctcatattgccagcaccgtcatacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaag 27132127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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