View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13301_low_4 (Length: 477)
Name: NF13301_low_4
Description: NF13301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13301_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 36348680 - 36349121
Alignment:
| Q |
19 |
atttcccttgagcttctatccttagctgcaagtgtctttgtacctggcacaggttttgaatattggtttcttacaattcaagaaacaaaattaacgcgat |
118 |
Q |
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| T |
36348680 |
atttcccttgagcttctatccttagctgcaagtgtctttgtacctggcacaggttttgaatattggtttcttacaattcaagaaacaaaattaacgcgat |
36348779 |
T |
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| Q |
119 |
tggattctctgcaacggctgcagtaaagttagatcttacattcaaaatcaatgatactaagatctaacagctctactgtcgctgcagaggatctgatatg |
218 |
Q |
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| T |
36348780 |
tggattctctgcaacggctgcagtaaagttagatcttacattcaaaatcaatgatactaagatctaacagctctactgtcgctgcagaggatctgatatg |
36348879 |
T |
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| Q |
219 |
atccaaaattaacatgcatatatatttaagctgcaaagactcacctcaagttgttcattgagtcttctctgaacctcaatctgcatttgcagcgcctcac |
318 |
Q |
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| T |
36348880 |
atccaaaattaacatgcatatatatttaagctgcaaagactcacctcaagttgttcattgagtcttctctgaacctcaatctgcatttgcagcgcctcac |
36348979 |
T |
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| Q |
319 |
ttatgtgcaaatctctaccaaaagggatatgaaagtcagcataaaatcttaaagtggtagagttttcatataaaacaagattacattaagagtgtgatta |
418 |
Q |
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| T |
36348980 |
ttatgtgcaaatctctaccaaaagggatatgaaagtcagcataaaatcttaaagtggtagagttttcatataaaacaagattacattaagagtgtgatta |
36349079 |
T |
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| Q |
419 |
aaaaagggttttgtttttcttacttgttgttattagtctgtg |
460 |
Q |
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| T |
36349080 |
aaaaagggttttgtttttcttacttgttgttattagtctgtg |
36349121 |
T |
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