View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13301_low_9 (Length: 358)
Name: NF13301_low_9
Description: NF13301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13301_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 336
Target Start/End: Original strand, 49095256 - 49095587
Alignment:
| Q |
9 |
acatcatcactcacaattatcgcatcgtacataaacggtggatcccttgttcaaaattaacaaatattttatgt-tatatagcgcatcgttcacatccaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||| |
|
|
| T |
49095256 |
acatcatcactcacaattatcgcatcgtacataaacggtggatcccttgttcaaaattaacaaatatatgttatatatatagcgcatcgttcacatccaa |
49095355 |
T |
|
| Q |
108 |
taggccattattgaatcttgtatcgtatcatacctatatctagttatcaacctacaacggtgg--gatcgaaaccaaaacatataaattaaaatcaat-n |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
49095356 |
taggccattattgaatcttgtatcgtatcatacctatatctagttatcaacctacaacagtgggagatcgagaccaaaacatataaatcaaaatcaataa |
49095455 |
T |
|
| Q |
205 |
nnnnnnnnntattattattatttattagcaagtgaaaatgaccataataaaagataatctacaaaatgcaagtatttatatatgcatccaattaaatatg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49095456 |
aaaaaaaaacattattattatttattagcaagtgaaaatgaccataataaaagataatctacaaaatgcaagtatttatatatgaatccaattaaatatg |
49095555 |
T |
|
| Q |
305 |
aatctcattccacatggagaagataatatcat |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49095556 |
aatctcattccacatggagaagataatatcat |
49095587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University